BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF04RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1524 1427 0.0
>3x_Contig1524
Length = 11623
Score = 1427 bits (720), Expect = 0.0
Identities = 799/822 (97%), Gaps = 3/822 (0%)
Strand = Plus / Minus
Query: 86 agaagaatcctttgatctcacgtcgattgctagtaaaccaaatcgcgcacaatccacaac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11623 agaagaatcctttgatctcacgtcgattgctagtaaaccaaatcgcgcacaatccacaac 11564
Query: 146 tctgagagagaaatatcatctagaaaaacaggcaactaatgacattttcgaggaagacgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11563 tctgagagagaaatatcatctagaaaaacaggcaactaatgacattttcgaggaagacgt 11504
Query: 206 tgaaaacttgatttcagagaataacaaatacctgttttccccagacactgatagcataga 265
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 11503 tgaaaacttgaatccagagaataaaaaatacctgttttccccagacactgatagcataga 11444
Query: 266 ttttgcatccccagaaaagaacctcgacgatttaaaacaacagtttattgaccagtcaac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11443 ttttgcatccccagaaaagaacctcgacgatttaaaacaacagtttattgaccagtcaac 11384
Query: 326 tgatgagcaaacgtcgttagatgaagaggagattgctactcaggataatgaaaataaaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11383 tgatgagcaaacgtcgttagatgaagaggagattgctactcaggataatgaaaataaaga 11324
Query: 386 tcatggaattgataaaaagaaactagaggacattatgaatggtattgacgacacagctga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11323 tcatggaattgataaaaagaaactagaggacattatgaatggtattgacgacacagctga 11264
Query: 446 tacttctatggatcctgttaatcttgctttaatgaaattagaagggacgtatgataaagg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11263 tacttctatggatcctgttaatcttgctttaatgaaattagaagggacgtatgataaagg 11204
Query: 506 ggaaaaggaaatagatgataaaagtccatcaattaacagcgaattagcccgggaagttga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11203 ggaaaaggaaatagatgataaaagtccatcaattaacagcgaattagcccgggaagttga 11144
Query: 566 aaatttccaaatcgtacaaactgcagctcttccttgaagcgctcgcaaaaagcaatccat 625
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 11143 aaatttccaaatcgtacaaactgcagctcttcctgaaagcgctcgcaaaaggcaatccat 11084
Query: 626 gttcatacagagaagacgcaacacaatgatcgattntagcgttcgtgattcactcattga 685
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 11083 gttcatacagagaagacgcaacacaatgatcgattttagcgttcgtgattcactcattga 11024
Query: 686 caaagactcctnctgcaccagattgggaaatactgatgaacaaattcgtaatttgttaaa 745
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 11023 caaagactcctcctgcaccagattggaaaatactgatgaacaaattcgtaatttgttaaa 10964
Query: 746 ccagtacacatttactgattcaaggcttaaaatagac-atttagagcaacatatcccgtt 804
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 10963 ccagtacacattaactgattcaaggcttaaaatagacaatttagagcaacatatcccgtt 10904
Query: 805 cattctgatggatgattctaaaatcggggcaaaccatttgacctttgatgaaaaaggaaa 864
|||||||||| ||||||||||| | ||||||||| |||||| ||||| |||||||||
Sbjct: 10903 cattctgatgtatgattctaaatctgtggcaaaccaattgacc-ttgattgaaaaggaaa 10845
Query: 865 ttctttctgaagttgattggaaagaatctattggattggaca 906
|||| ||||||||||||||||||| |||||||||||| ||||
Sbjct: 10844 ttctatctgaagttgattggaaag-atctattggatttgaca 10804
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7656
Number of Sequences: 1807
Number of extensions: 7656
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)