BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF05RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1723 807 0.0
3x_Contig1790 303 3e-82
3x_Contig1802 182 8e-46
3x_Contig1560 149 1e-35
3x_Contig1807 141 3e-33
3x_Contig1804 137 4e-32
3x_Contig1547 117 4e-26
>3x_Contig1723
Length = 15177
Score = 807 bits (407), Expect = 0.0
Identities = 407/407 (100%)
Strand = Plus / Minus
Query: 45 catgtatgtgtgacttgctctaaaagtcagcaagaaaccctcaggtactgcaatattagg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catgtatgtgtgacttgctctaaaagtcagcaagaaaccctcaggtactgcaatattagg 381
Query: 105 ttagcaggtgacgcagacgttacagtttcctttggtcgatagatgtggcaactgcagatg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttagcaggtgacgcagacgttacagtttcctttggtcgatagatgtggcaactgcagatg 321
Query: 165 cttttcgttcttgggaagtaacagcagctatactctcttgaccattaatgctttttttct 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttttcgttcttgggaagtaacagcagctatactctcttgaccattaatgctttttttct 261
Query: 225 cggtctactcatttctttcttgtgacaatgagaaaaagcatgaatccgaggggcctacgc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cggtctactcatttctttcttgtgacaatgagaaaaagcatgaatccgaggggcctacgc 201
Query: 285 tgtcattgcagcttgtttaaaatatactctcagaatatgtacaggaaataatttttatca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgtcattgcagcttgtttaaaatatactctcagaatatgtacaggaaataatttttatca 141
Query: 345 cgtactgctttgttcattgcatttgggaaattttgcagaaaagtttggtgaaatattcaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 cgtactgctttgttcattgcatttgggaaattttgcagaaaagtttggtgaaatattcaa 81
Query: 405 aacgacaaacgacatatatagcaaagtgattgattaaagcagcaata 451
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 aacgacaaacgacatatatagcaaagtgattgattaaagcagcaata 34
>3x_Contig1790
Length = 27369
Score = 303 bits (153), Expect = 3e-82
Identities = 255/283 (90%), Gaps = 6/283 (2%)
Strand = Plus / Minus
Query: 460 tgttggactggatattcatcatgtttggtagtaggggcttggcctagagggttagtagta 519
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5307 tgttgggctggatattcatcatgtttggtagtagggacttggcctagagggttagtagta 5248
Query: 520 ttaacgtaattggatgccattctgacttgtagttgttaatgaaataaatggataattaaa 579
|| |||| | ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 5247 ttggtgtaaatagatgccattctgacttgtagttgttaatg-aataaatggatagttaaa 5189
Query: 580 gtggtgatcgactagttaagtaaaatacttacggtgttctccttgggtttc-tacatcag 638
||||||||||||| ||||||||| ||||||||||| ||||||| ||||| |||||| |
Sbjct: 5188 ttggtgatcgactaattaagtaaattacttacggtgctctcctt--gtttcttacatctg 5131
Query: 639 acatantagttaatgtagaaccataattagtatgtcgtcaaatccagacgg-gaaatggg 697
||||| |||||||||||||| ||||||| |||||| ||||||||||| || |||| ||
Sbjct: 5130 acatacaagttaatgtagaacaataattaatatgtcatcaaatccagatggaaaaattgg 5071
Query: 698 atgaagaaaccatctactgatatacnttttcagattgggcttt 740
|||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 5070 atgaagaaaccatctacttatatac-ttttcagattgggcttt 5029
Score = 117 bits (59), Expect = 4e-26
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 532 gatgccattctgacttgtagttgttaatgaaataaatggataattaaagtggtgatcgac 591
|||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 6822 gatgccattctgacttgtggttgttaatgaaataaatggataatgaaattggtgatcgac 6881
Query: 592 tagttaagtaaaatactta 610
|||||| ||||| ||||||
Sbjct: 6882 tagttacgtaaactactta 6900
>3x_Contig1802
Length = 45229
Score = 182 bits (92), Expect = 8e-46
Identities = 114/120 (95%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 460 tgttggactggatattcatcatgtttggtagtaggggcttggcctagagggttagtagta 519
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 45091 tgttggactggatattcatcaaaaatggtagtaggggcttggcctagagggttagtagta 45150
Query: 520 ttaacgtaattggatgccattctgacttgtagttgttaatgaaataaatggataattaaa 579
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 45151 ttaacgtaattggatgccattctgacttgtagttgttaatgatataaat-gataattaaa 45209
>3x_Contig1560
Length = 9209
Score = 149 bits (75), Expect = 1e-35
Identities = 93/99 (93%)
Strand = Plus / Plus
Query: 460 tgttggactggatattcatcatgtttggtagtaggggcttggcctagagggttagtagta 519
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 1999 tgttggactggatattcatcatgtttggtagtaggggcttggcatagagcgttagtagta 2058
Query: 520 ttaacgtaattggatgccattctgacttgtagttgttaa 558
|| | |||| ||||||||||||||| |||||||||||||
Sbjct: 2059 ttgatgtaactggatgccattctgatttgtagttgttaa 2097
Score = 135 bits (68), Expect = 2e-31
Identities = 134/154 (87%), Gaps = 2/154 (1%)
Strand = Plus / Plus
Query: 587 tcgactagttaagtaaaatacttacggtgttctccttgggtttctacatcagacatanta 646
||||||| ||||||||| ||||||||||||||||||||| || |||||| |||||| |
Sbjct: 2215 tcgactaattaagtaaattacttacggtgttctccttggtttcttacatctgacatataa 2274
Query: 647 gttaatgtagaaccataattagtatgtcgtcaaatccagacgggaa-atgggatgaagaa 705
|||||||||||| | ||||||||||||||||||||||| ||||| || ||||||||||
Sbjct: 2275 cttaatgtagaacaaatattagtatgtcgtcaaatccagaggggaagataggatgaagaa 2334
Query: 706 accatctactgatatacnttttcagattgggctt 739
||| |||| | |||||| |||| |||||||||||
Sbjct: 2335 accttctagttatatacttttt-agattgggctt 2367
Score = 113 bits (57), Expect = 6e-25
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 459 gtgttggactggatattcatcatgtttggtagtaggggcttggcctagagggttagtagt 518
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 9085 gtgttggactggatattcatcatgtttggtagtaggggtttggcatagagggttagtagt 9144
Query: 519 attaacgtaattggatgccattctgacttgtagttgttaatgaaataaatgg 570
||| | || ||||||| ||| ||||| |||||| ||||| |||| ||||
Sbjct: 9145 attgattaaaatggatgctatttcgacttatagttgctaatgtaatanatgg 9196
>3x_Contig1807
Length = 66587
Score = 141 bits (71), Expect = 3e-33
Identities = 110/123 (89%)
Strand = Plus / Minus
Query: 503 ctagagggttagtagtattaacgtaattggatgccattctgacttgtagttgttaatgaa 562
||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct: 8695 ctagagggttagtagtattaatgtaattggatgtcattctgacttgtagttgataatgaa 8636
Query: 563 ataaatggataattaaagtggtgatcgactagttaagtaaaatacttacggtgttctcct 622
|| |||||||||||||| |||| ||||||| |||||| | || |||| ||||||||||
Sbjct: 8635 attaatggataattaaatcggtggtcgactaattaagtgcattatttacagtgttctcct 8576
Query: 623 tgg 625
|||
Sbjct: 8575 tgg 8573
>3x_Contig1804
Length = 51183
Score = 137 bits (69), Expect = 4e-32
Identities = 94/101 (93%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 460 tgttggactggatattcatcatgtttggtagtaggggcttggcctagagggttagtagta 519
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 51084 tgttgcactggatattcatcaagtttggtagtaggggcttgacctagagggttagtagta 51143
Query: 520 ttaacgtaattggatgccattctgacttgtagttgttaatg 560
|| | |||| |||||| ||||||||||||||||||||||||
Sbjct: 51144 ttgatgtaactggatg-cattctgacttgtagttgttaatg 51183
>3x_Contig1547
Length = 9547
Score = 117 bits (59), Expect = 4e-26
Identities = 83/91 (91%)
Strand = Plus / Minus
Query: 460 tgttggactggatattcatcatgtttggtagtaggggcttggcctagagggttagtagta 519
||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct: 96 tgttggactggatattcataatgtttggtagtagggtattggcatagagggttagtagta 37
Query: 520 ttaacgtaattggatgccattctgacttgta 550
|||| ||||||||||| |||| ||| |||||
Sbjct: 36 ttaaagtaattggatgacattatgaattgta 6
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6464
Number of Sequences: 1807
Number of extensions: 6464
Number of successful extensions: 115
Number of sequences better than 1.0e-20: 7
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)