BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF06FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1316 0.0
>3x_Contig1762
Length = 22098
Score = 1316 bits (664), Expect = 0.0
Identities = 784/818 (95%), Gaps = 5/818 (0%)
Strand = Plus / Plus
Query: 88 ataactccaaggtctaacccatgtcggtaggttcaaagagttgacttggccccaaagacg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12570 ataactccaaggtctaacccatgtcggtaggttcaaagagttgacttggccccaaagacg 12629
Query: 148 cgaaatggcgtttaatggcaacgtactgtaacagaaaaacagccagttattattgaatat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12630 cgaaatggcgtttaatggcaacgtactgtaacagaaaaacagccagttattattgaatat 12689
Query: 208 tttaatacgatacttccccttcactttatcctgcgaatctccttccaccacatcgccaga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12690 tttaatacgatacttccccttcactttatcctgcgaatctccttccaccacatcgccaga 12749
Query: 268 ttccgctacttttatcctttggtaatgctgatttatcaagtacgaactaatgattaacgt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12750 ttccgctacttttatcctttggtaatgctgatttatcaagtacgaactaatgattaacgt 12809
Query: 328 aaaactagtcgcgacaacccacttcaccatgcgttttttcgaattctccggtctcacaat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12810 aaaactagtcgcgacaacccacttcaccatgcgttttttcgaattctccggtctcacaat 12869
Query: 388 gggacccgatgacataaacctctggctaagcaacatcttcgtcttatttttcaaataagg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12870 gggacccgatgacataaacctctggctaagcaacatcttcgtcttatttttcaaataagg 12929
Query: 448 acctgacacacgttgtggaacctgtggccacggaatccgcgacattgtcaacgatacgtt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12930 acctgacacacgttgtggaacctgtggccacggaatccgcgacattgtcaacgatacgtt 12989
Query: 508 cctagatattccaatcattgcgagtatctaaccaccgacacataaattcaaaaagataac 567
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 12990 cctagatattccaatcattgcgagtatctaaccaccgacacaaaaattcaaaaagaaaac 13049
Query: 568 agtcaaataattaccttttaccttgntatcaccatataacacatcacatatcacataaca 627
||||||||||||||||||||||||| ||||||| | |||||| |||| | |||| ||||
Sbjct: 13050 agtcaaataattaccttttaccttgtaatcaccaaaaaacacaacacaaaacacaaaaca 13109
Query: 628 ctatccaacagccctatgattaccaactactaatacactgcanactcttttctatcttct 687
||| ||||||||| || || ||||||||||||||||||||| |||||||||||||||||
Sbjct: 13110 ctaaccaacagccttaggaaaaccaactactaatacactgcaaactcttttctatcttct 13169
Query: 688 agtaccacgctaatgacaattttggcgcgctgctccaaattatctctct-gaaaattcat 746
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 13170 agtaccacgctaaggacaattttggcgcgctgctccaaattatctctctagaaaatccat 13229
Query: 747 gtgccgatcttaaatacattcttctatacagaaaaacct-ttattctaaagcttttttta 805
||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct: 13230 gtgccgatcttaaatacattc-tctatacaggaaaacctcttattctaaagcttttttta 13288
Query: 806 tttaaagaaatcctcggagggcctttaa-tgaaatgggaaaaatgtgaaaatgatctaac 864
| ||||||||||||| || ||||||||| ||||||| ||||||||||||||||| |||||
Sbjct: 13289 tataaagaaatcctc-gaaggcctttaagtgaaatgtgaaaaatgtgaaaatgaactaac 13347
Query: 865 cggacacattggggaaagcgcattcgatgtgaaataat 902
|| ||| | |||||||||||||| ||||||||||||
Sbjct: 13348 cgaacagaatggggaaagcgcatcgaatgtgaaataat 13385
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6406
Number of Sequences: 1807
Number of extensions: 6406
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)