BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF06RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1469 0.0
3x_Contig1214 387 e-107
>3x_Contig1338
Length = 8134
Score = 1469 bits (741), Expect = 0.0
Identities = 871/904 (96%), Gaps = 10/904 (1%)
Strand = Plus / Minus
Query: 39 aactagggaccccttccaccatcttagaatagcgaggaagaaggcattccatacagctga 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7841 aactagggaccccttccaccatcttagaatagcgaggaagaaggcattccatacagctga 7782
Query: 99 gatgatacccatataggctctctgtttgactcgttctgagaaccacgtgattccgagaag 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7781 gatgatacccatataggctctctgtttgactcgttctgagaaccacgtgattccgagaag 7722
Query: 159 gaaaatgatatgaataacctgatatggaatagaaagtagctgcacattgattgtgctgaa 218
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7721 gaaaatgatatgaataacctgatatggaatagaaagtagctgcacattgaatgtgctgaa 7662
Query: 219 ccccacagattttatagttagggtgagatatgttgttagaacattcgttggcacataagc 278
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7661 ccccacagattttagagttagggtgagatatgttgttagaacattcgttggcacataagc 7602
Query: 279 aatcaacccaatgaagtaaattggccataaatcataatcagagatggcagaccaaatcaa 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7601 aatcaacccaatgaagtaaattggccataaatcataatcagagatggcagaccaaatcaa 7542
Query: 339 tttgaaagagattggttgtctgttatgcatatcacccttagatggatcatctctaagaac 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7541 tttgaaagagattggttgtctgttatgcatatcacccttagatggatcatctctaagaac 7482
Query: 399 tctattaacaacgatcttctcctctctctctgtgaaccaaccctttggatgcatccaatt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7481 tctattaacaacgatcttctcctctctctctgtgaaccaaccctttggatgcatccaatt 7422
Query: 459 ctttgtttgaacggcactaggtaccattaaatagaatcctgtgagaccaataaagaaggt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7421 ctttgtttgaacggcactaggtaccattaaatagaatcctgtgagaccaataaagaaggt 7362
Query: 519 taaaatgccttctagaaggaacaaatactgccatccagcaagaccaccgatacctctcat 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7361 taaaatgccttctagaaggaacaaatactgccatccagcaagaccaccgatacctctcat 7302
Query: 579 tcttaagataccgtatgccaatatagcgctaagtatctgaactaatgataaactcgtcca 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7301 tcttaagataccgtatgccaatatagcgctaagtatctgaactaatgataaactcgtcca 7242
Query: 639 gaatccaagat-atctgatcgaaaactctttactggtaaagaaagtagttaaccatagaa 697
||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7241 gaa-ccaagataatctgatcgaaaactctttactggtaaagaagtaagttaaccatagaa 7183
Query: 698 caagatcagcgatatta-caccttctagagctncgatcaaacantctgcaa--taaaaaa 754
|||||||||||||| | |||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 7182 caagatcagcgataaaaccaccttctagagctccgatcaaaca-tctgcaaataaaaaaa 7124
Query: 755 ccagtcttattatgcatagcagcctgcgccatggccacatcggaccaggatcaaatttg- 813
||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||
Sbjct: 7123 ccagtcttattatgcatagcagcctgcgccatggccacaacggaccaagaacaaatttga 7064
Query: 814 atgggaatgaaaatatctggncct-atctcttaaagatcatttgggaggggatttcggct 872
|||||||||||||||||||| ||| |||||||| |||||| |||||||||||||||||||
Sbjct: 7063 atgggaatgaaaatatctgggcctaatctcttagagatcaattgggaggggatttcggct 7004
Query: 873 agt-aaaaggaaatgtaaaaga-tcgattacctaaattggnatcattnctgttactaccc 930
||| ||||||| ||||| |||| | |||||||||||||| |||||| ||||| |||||
Sbjct: 7003 agtaaaaaggagatgtagaagatttgattacctaaattgtaatcatttctgttcataccc 6944
Query: 931 aaat 934
||||
Sbjct: 6943 aaat 6940
>3x_Contig1214
Length = 6334
Score = 387 bits (195), Expect = e-107
Identities = 369/427 (86%)
Strand = Plus / Minus
Query: 172 ataacctgatatggaatagaaagtagctgcacattgattgtgctgaaccccacagatttt 231
||||| || |||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct: 527 ataacttggtatggaatagaaagtagctgcacattcaaagtgctgaatcccacagatttt 468
Query: 232 atagttagggtgagatatgttgttagaacattcgttggcacataagcaatcaacccaatg 291
| |||| || |||||||| | || | ||| |||| ||||||||||||||||||||
Sbjct: 467 agtgttaatgttagatatgtcgatacagtgttcattgggacataagcaatcaacccaatc 408
Query: 292 aagtaaattggccataaatcataatcagagatggcagaccaaatcaatttgaaagagatt 351
|||||||||||||||| ||||||||||||||| ||| ||| | ||| |||||||||||
Sbjct: 407 aagtaaattggccatagatcataatcagagatagcactccacagcaacttgaaagagatc 348
Query: 352 ggttgtctgttatgcatatcacccttagatggatcatctctaagaactctattaacaacg 411
|||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 347 ggttgtctattatgcatgtcacctttagatggatcatctctaagaactctgttaacaaca 288
Query: 412 atcttctcctctctctctgtgaaccaaccctttggatgcatccaattctttgtttgaacg 471
||||| |||||||| ||||||||||| |||||||||||||||||||| || ||||| |||
Sbjct: 287 atcttttcctctctttctgtgaaccacccctttggatgcatccaatttttcgtttggacg 228
Query: 472 gcactaggtaccattaaatagaatcctgtgagaccaataaagaaggttaaaatgccttct 531
|| | ||| ||||||| ||| || || | |||||||| | |||||||||||| ||||||
Sbjct: 227 gcgccagggaccattagataaaaaccggaaagaccaatgaggaaggttaaaattccttct 168
Query: 532 agaaggaacaaatactgccatccagcaagaccaccgatacctctcattcttaagataccg 591
|| | |||||| || ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 167 agcaagaacaagtattgccatccagcaagaccaccgatgcctctcattcttaaaataccg 108
Query: 592 tatgcca 598
|| ||||
Sbjct: 107 tacgcca 101
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6292
Number of Sequences: 1807
Number of extensions: 6292
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 2
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)