BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC42ZF07FM1.SCF screened BAC_end (954 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig868 763 0.0 >3x_Contig868 Length = 3693 Score = 763 bits (385), Expect = 0.0 Identities = 468/492 (95%), Gaps = 3/492 (0%) Strand = Plus / Plus Query: 233 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 69 Query: 293 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 129 Query: 353 ctttcgtgctgagtttcccacacttattcgggtcagtaatgtaaattgttcgttaacacc 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130 ctttcgtgctgagtttcccacacttattcgggtcagtaatgtaaattgttcgttaacacc 189 Query: 413 atgcaaattgttttattccttcaaatttcattataacttttttcgtttgtttaaacttgt 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 190 atgcaaattgttttattccttcaaatttcattataacttttttcgtttgtttaaacttgt 249 Query: 473 caaaaattt-atccaanagatgactttatgggtcacgtgaacacatatcatctcgttaat 531 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 250 caaaaatttcatccaaaagatgactttatgggtcacgtgaacacatatcatctcgttaat 309 Query: 532 aatgaatagccggtttttctcatttgacaatttgcagcaggatcaagctcatctaatctc 591 ||||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct: 310 aatgattag-cggtttttctcattgaacaatttgcagcaggatcaagctcatctcatctc 368 Query: 592 atctaattgtaccgggctttaaagttttgg-aatgataagtgaagctgaattttcgttca 650 |||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| Sbjct: 369 atctcattgtaccgggctttaaagttatggaaatgataagtgaagctgaatttcggttca 428 Query: 651 gttggtagtgggaattttcacgtggattcacccttaaccgatagattcgtgattacaaaa 710 |||||||||| ||||||||||| || ||| | ||| |||||||| ||||||||||| Sbjct: 429 gttggtagtgtgaattttcacggtgaatcaacactaaacgatagatcgatgattacaaaa 488 Query: 711 cgggtctttgtt 722 ||||||| |||| Sbjct: 489 cgggtctatgtt 500 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8423 Number of Sequences: 1807 Number of extensions: 8423 Number of successful extensions: 68 Number of sequences better than 1.0e-20: 1 length of query: 954 length of database: 10,358,551 effective HSP length: 16 effective length of query: 938 effective length of database: 10,329,639 effective search space: 9689201382 effective search space used: 9689201382 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)