BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF07RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1496 1481 0.0
>3x_Contig1496
Length = 9544
Score = 1481 bits (747), Expect = 0.0
Identities = 843/868 (97%), Gaps = 6/868 (0%)
Strand = Plus / Minus
Query: 54 gcttcaaaggaagatatctcagaatctacagcctcacttaattcggccacgtcgacaagt 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2951 gcttcaaaggaagatatctcagaatctacagcctcacttaattcggccacgtcgacaagt 2892
Query: 114 cttaattctgaatcgaatacgtcacatatcaaaatatccaacttattaatattttctcgt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2891 cttaattctgaatcgaatacgtcacatatcaaaatatccaacttattaatattttctcgt 2832
Query: 174 aggttaatcttaagtgtttgtgacaacgctaagcagtttagaacgtcccaatccacaact 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2831 aggttaatcttaagtgtttgtgacaacgctaagcagtttagaacgtcccaatccacaact 2772
Query: 234 aacagtcttttttcatctttcaattcataaagtctattctgaatcgacaaatcgaacaca 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2771 aacagtcttttttcatctttcaattcataaagtctattctgaatcgacaaatcgaacaca 2712
Query: 294 ttaagtttcgccaaggcggtgatattatcaattttttggtttttccagtcgtgaaatata 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2711 ttaagtttcgccaaggcggtgatattatcaattttttggtttttccagtcgtgaaatata 2652
Query: 354 ttccagatataaaattgataaatcaccgatgaagcgataatccactctatgcttcttctc 413
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2651 ttccagatataaaattgataaatcaccgatgaagcgata-tccactctatgcttcttctc 2593
Query: 414 caggtctcttaaatgaaataagtctaaactttttttatttttctcaggacactctntaat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2592 caggtctcttaaatgaaataagtctaaactttttttatttttctcaggacactctttaat 2533
Query: 474 agaaattcgaccagaaaaattctgtggaatgtttttcgtataagtaatgaaaaccaattg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2532 agaaattcgaccagaaaaattctgtggaatgtttttcgtataagtaatgaaaaccaattg 2473
Query: 534 atcatgangaagntatacatcttctaatctttcctgagtgctacagagtgagctcaacac 593
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2472 atcatgaggaagtataacatcttctaatctttcctgagtgctacagagtgagctcaacac 2413
Query: 594 ttcatgaagtagcggatggtctctaaatatgtttcgagcacagcatacctgagaaaatgc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2412 ttcatgaagtagcggatggtctctaaatatgtttcgagcacagcatacctgagaaaatgc 2353
Query: 654 gatccattagttcatttaacacgtcctatcgtgagcgaaactcgtattggtcgaaaaagt 713
||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2352 gatccataagttcattaacaacgtcctatcgtgagcgaaactcgtattggtcgaaaaagt 2293
Query: 714 aaagaactcctcgaggttagggccattacgatattgtccgacgatattgctatatgcaat 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2292 aaagaactcctcgaggttagggccattacgatattgtccgacgatattgctatatgcaat 2233
Query: 774 agtcttcaaaag-ttctctagatgcatagcagttaaccgactattca-ttggaataattt 831
|||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct: 2232 agtcttcaaaagtttctctagatgcatagcagttaaccgactattcatttggataaatat 2173
Query: 832 cgagtgataaacc-agattttaggagtttgtaaagttcc-ataaaatcaagttcttccc- 888
||||||||||||| |||| ||| |||||||||||||||| |||||||||||||||||||
Sbjct: 2172 cgagtgataaaccaagatattaagagtttgtaaagttccaataaaatcaagttcttccca 2113
Query: 889 atgaatagaaattttttttaaacaatca 916
|||| ||||||||| | ||| |||||||
Sbjct: 2112 atgagtagaaatttctcttagacaatca 2085
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7963
Number of Sequences: 1807
Number of extensions: 7963
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)