BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF08RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1410 959 0.0
>3x_Contig1410
Length = 7640
Score = 959 bits (484), Expect = 0.0
Identities = 536/548 (97%), Gaps = 4/548 (0%)
Strand = Plus / Minus
Query: 46 cttggattgcagtgtatctcgccagggatagcgactgctaatttggatgacgaacggttg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cttggattgcagtgtatctcgccagggatagcgactgctaatttggatgacgaacggttg 488
Query: 106 caaacgtttaacaaatcgaagtacattgcgatgcagcagaagagacagatcaggcgtatg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 caaacgtttaacaaatcgaagtacattgcgatgcagcagaagagacagatcaggcgtatg 428
Query: 166 aatttggattctgtaacgataaatgaggatgagcatgaacacgagcatgagcattttttc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 427 aatttggattctgtaacgataaatgaggatgagcatgaacacgagcatgagcaagaaaac 368
Query: 226 gagcaagacgaagagcaagatgacgagaaagaacacgaaaaagaacatgaacaggatgaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gagcaagacgaagagcaagatgacgagaaagaacacgaaaaagaacatgaacaggatgaa 308
Query: 286 gaccaagaacaagaacaagatgatgaaaacacgaaacttgctgagaaagctggtaccagc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaccaagaacaagaacaagatgatgaaaacacgaaacttgctgagaaagctggtaccagc 248
Query: 346 atcaaaaataataataatattacagcctcagacctgggaaactgacaaatcatcctcaag 405
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 247 atcaaaaataataataatatgacagcctcagacct-ggaaactgacaaatcatcctcaag 189
Query: 406 taattcgatagatggtaccaccactcctggtaccgagacttcaatcaacacttccaagag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 taattcgatagatggtaccaccactcctggtaccgagacttcaatcaacacttccaagag 129
Query: 466 tcaatccaaatcattgaaaagaaataacataccaaaaccacttacgttaaaatcaaagca 525
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 128 tcaatccaaatcattgaaaagaaat-acataccaaaaccacttacgttaaaatcaaagca 70
Query: 526 aaatacacctaatggatcattacccaatataaggtcagctccaccgatggtaacaagaca 585
|||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||
Sbjct: 69 aaatacacctaatggatcattacccaatataaggtcagct-caacgatggt-acaagaca 12
Query: 586 tccaattc 593
||||||||
Sbjct: 11 tccaattc 4
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7601
Number of Sequences: 1807
Number of extensions: 7601
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)