BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZF09FM1.SCF screened BAC_end
         (968 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1381                                                        1195   0.0  

>3x_Contig1381 
          Length = 7318

 Score = 1195 bits (603), Expect = 0.0
 Identities = 650/663 (98%), Gaps = 2/663 (0%)
 Strand = Plus / Minus

                                                                        
Query: 88   tgctctaggtagagaagtgctagatgttgcggccgccgcagttagaccaggtatcactac 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1893 tgctctaggtagagaagtgctagatgttgcggccgccgcagttagaccaggtatcactac 1834

                                                                        
Query: 148  ggatgaaattgatgagatagtgcataacgagactatcaagaggggagcatacccatctcc 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1833 ggatgaaattgatgagatagtgcataacgagactatcaagaggggagcatacccatctcc 1774

                                                                        
Query: 208  tctcaactactataatttccctaaatccgtctgtacttctgtgaacgagattatctgtca 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1773 tctcaactactataatttccctaaatccgtctgtacttctgtgaacgagattatctgtca 1714

                                                                        
Query: 268  tggtgttcctgacaaatatgttctaaaagagggagatattgtcaatttagatgtctcatt 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1713 tggtgttcctgacaaatatgttctaaaagagggagatattgtcaatttagatgtctcatt 1654

                                                                        
Query: 328  gtattaccaaggcatgcatgcagatttaaacgaaacttactacgttggtgagactatcgc 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1653 gtattaccaaggcatgcatgcagatttaaacgaaacttactacgttggtgagactatcgc 1594

                                                                        
Query: 388  caaggatgtcataaataccgttgaaactgcccgtgaatgtttgaaactcgccatcaagat 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1593 caaggatgtcataaataccgttgaaactgcccgtgaatgtttgaaactcgccatcaagat 1534

                                                                        
Query: 448  gtgtaaaccaggcgtaacttttcaatccttgggagactgcattgaaaagcactccaaatc 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1533 gtgtaaaccaggcgtaacttttcaatccttgggagactgcattgaaaagcactccaaatc 1474

                                                                        
Query: 508  caacaaatgctctgttgttaggacttactgtggtcatggtgtcagtgagtttttccactg 567
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1473 caacaaatgctctgttgttaggacttactgtggtcatggtgtcggtgagtttttccactg 1414

                                                                        
Query: 568  tgcccccagcattccacattatgctaacaacagaacgcccggtgtcatgatacctggaat 627
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1413 tgcccccagcattccacattatgctaacaacagaacgcccggtgtcatgaaacctggaat 1354

                                                                        
Query: 628  gggtctcactatagaacctatgattaacgaaagtgtatggcatgatatcaccctggcctg 687
            ||   |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||
Sbjct: 1353 ggtcttcactatagaacctatgattaacgaaggtgtatggcaagatatca-cctggcctg 1295

                                                                        
Query: 688  acgattggacttctttcacaaaggat-gttaagttagtgctcattttgagcaaacccttt 746
            |||||||||||||||  ||||||||| || ||||||||||||| ||||||||||||||||
Sbjct: 1294 acgattggacttcttcaacaaaggatggtaaagttagtgctcagtttgagcaaacccttt 1235

               
Query: 747  tgg 749
            |||
Sbjct: 1234 tgg 1232


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5609
Number of Sequences: 1807
Number of extensions: 5609
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)