BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF09RM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1267 0.0
>3x_Contig1755
Length = 22936
Score = 1267 bits (639), Expect = 0.0
Identities = 737/763 (96%), Gaps = 6/763 (0%)
Strand = Plus / Minus
Query: 44 cttctaacttcttccctttgacattattgtatttatgcctggaagtataactgttgtaaa 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22886 cttctaacttcttccctttgacatcattgtatttatgcctggaagtataactgttgtaaa 22827
Query: 104 tattttcaaaggccttgtctacatctcttttggtttcaaaataatgtagtactgcgtttg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22826 tattttcaaaggccttgtctacatctcttttggtttcaaaataatgtagtactgcgtttg 22767
Query: 164 cgccttggtcaagagcacattgtctatgaagacgagttaaagagcgttgcaatgtgtttg 223
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | |
Sbjct: 22766 cgccttggtcaagagcacattgtctaggaagacgagttaaagagcgttgcaatg-gatag 22708
Query: 224 ttgggtaaacatatcctccatttcaaattctttgccaaatctatggttctttcggcaacc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22707 ttgggtaaacatatcctccatttcaaattctttgccaaatctatggttctttcggcaacc 22648
Query: 284 gcaatcattgatttcgcagactgtctaacatatcttaaaaacaaaaaagcatcggtcgaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22647 gcaatcattgatttcgcagactgtctaacatatcttaaaaacaaaaaagcatcggtcgaa 22588
Query: 344 tttggatcctgaagtaggtccttacaaaagaagttagttttggtgnaaatctttataagc 403
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 22587 tttggatcctgaagtaggtccttacaaaagaagttagttttggtg-aaatctttataagc 22529
Query: 404 aacatccaatctgtagattttacgcctaagtttcttttggagtttttgtagttttctcat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22528 aacatccaatctgtagattttacgcctaagtttcttttggagtttttgtagttttctcat 22469
Query: 464 tgattgctccacttcacttttattgacagagaaatttgaataaagctcgatgntactctg 523
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 22468 tgattgctccacttcacttttattgacagagaaatttgaataaagctcgatgtaactctg 22409
Query: 524 aatagattcaattactagaagcatttcacgaatcaattggtaaatgggttntgcaaaaaa 583
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 22408 aatagattcaattactagaagcatttcacgaatcaattggtaaatgggttttgcaaaaaa 22349
Query: 584 tgaccgtagaatattattgtaaatgggctgtgttgaagtcaataccaagatttgggattc 643
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22348 tgaccgtagaatattattgtaaat-ggctgtgttgaagtcaataccaagatttgggattc 22290
Query: 644 cagaagacgcctgaggagtttgcattccagagaanatcattggttgaattggcagatttc 703
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 22289 cagaagacgcctgaggagtttgcattccagagaaaatcattgg-tgaattggcagatttc 22231
Query: 704 gcttgaaatgattgcaccttcgtattcgtaccgnccttgaaaaactgctcccattccggc 763
|||||| ||||| |||||| ||||||||||||| | ||||||||||||||| ||||| ||
Sbjct: 22230 gcttgagatgatggcacctccgtattcgtaccgtctttgaaaaactgctccaattcc-gc 22172
Query: 764 ctttgttaattagccctttgtttgttggcatttcacctaatgg 806
||||||||| ||| || ||||| ||||||| | ||| ||||||
Sbjct: 22171 ctttgttaa-taggccattgttagttggcaatacacgtaatgg 22130
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7728
Number of Sequences: 1807
Number of extensions: 7728
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)