BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF10FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1664 1166 0.0
>3x_Contig1664
Length = 15696
Score = 1166 bits (588), Expect = 0.0
Identities = 802/856 (93%), Gaps = 13/856 (1%)
Strand = Plus / Minus
Query: 85 gcaaaatttacaatcaagaataagggcgagtagcaagaacccgatgatatataggagtaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13794 gcaaaatttacaatcaagaataagggcgagtagcaagaacccgatgatatataggagtaa 13735
Query: 145 gcttctaaggtataggaaaacctatttgcagaatttcatcagacaaagggtctgaggaag 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13734 gcttctaaggtataggaaaacctatttgcagaatttcatcagacaaagggtctgaggaag 13675
Query: 205 gaatctgtaactgatccttccacaacagtactgtttacaatacgcagctattcatgtgtg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13674 gaatctgtaactgatccttccacaacagtactgtttacaatacgcagctattcatgtgtg 13615
Query: 265 aaccggttgtgggtgtttagaaaaaaaaaaaaagaacactacatacatcgctgcctgttc 324
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 13614 aaccggttgtgggtgtttagaaaaaagaaaaaagaacactacatacatcgctgcctgttc 13555
Query: 325 ttcttgttctgcgttacttataataataataggtcattctctacaaagttccttcgtgtc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13554 ttcttgttctgcgttacttataataataataggtcattctctacaaagttccttcgtgtc 13495
Query: 385 tgtgcaataaatcacatcaacatataaatactatagtcattacttaaccgtaaaggtgcg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13494 tgtgcaataaatcacatcaacatataaatactatagtcattacttaaccgtaaaggtgcg 13435
Query: 445 gaaaatatgtatgatgaagtaatgagtaagatgagatgcatttccgaaacgaaggaatgg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13434 gaaaatatgtatgatgaagtaatgagtaagatgagatgcatttccgaaacgaaggaatgg 13375
Query: 505 acaccggcaatttcgtgctgggatggaacaggttttcatgattccaatcatttcttgtcg 564
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13374 aca-cggcaatttcgtgctgggatggaacaggttttcatgattccaatcatttcttgtcg 13316
Query: 565 ca-ccttttactcgcaattcttgactcttggaaatcttgagcagtct-acaacagcggat 622
|| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 13315 cacccttttactcgcaattcttgactcttgtaaatcttgagcagtctcacaacagcggaa 13256
Query: 623 taacgttgctctggcgggaataaatggataaaaa-gatttaagctgccggacagtgaacc 681
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 13255 taacgttgctctggcgggaataaatggataaaaaggatttaagctgccggacagtgaacc 13196
Query: 682 caatcgtcaacccaggataag-aagggaaaatcgctttacttacgaaatgcctcagct-t 739
|||||||||| ||| || ||| |||| ||||||||||||||||||| |||| ||||| |
Sbjct: 13195 caatcgtcaaaccaagaaaagaaaggaaaaatcgctttacttacgagatgctacagctat 13136
Query: 740 tcttccct-attttattataaaagaacccccatgttatcaatcgaatgattattccttct 798
| ||||| || | |||| |||||| | | || |||||||||||||| ||||| |||
Sbjct: 13135 ccatccctcatctcattagaaaagagcacgcagtttatcaatcgaatgtatattcgttc- 13077
Query: 799 taatcggattgaaagtgttcttgttggtttagcgcaccattttttcggggccattc-aaa 857
||||||||||||| ||||||||||| || ||||||| |||| | ||| | ||||| |||
Sbjct: 13076 taatcggattgaaggtgttcttgtt-gtatagcgcaacattatgtcgtgcacattcaaaa 13018
Query: 858 tttctgcagggaattttgaatgggccaattaccatctcccaaaagagggaaataagctta 917
|| ||||| ||||||||||||| | | || |||| | |||||| |||||||||||||
Sbjct: 13017 ttcctgca-ggaattttgaatgtg-cgatagacatccacaaaaaga-ggaaataagctta 12961
Query: 918 aactttttccgcccaa 933
||||||| ||||||||
Sbjct: 12960 aacttttcccgcccaa 12945
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,045
Number of Sequences: 1807
Number of extensions: 14045
Number of successful extensions: 230
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)