BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZF10RM1.SCF screened BAC_end
         (925 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1243                                                         950   0.0  

>3x_Contig1243 
          Length = 5571

 Score =  950 bits (479), Expect = 0.0
 Identities = 596/622 (95%), Gaps = 10/622 (1%)
 Strand = Plus / Plus

                                                                       
Query: 113 attgctagttccagttcaggtcccgcgtcctgcgtaacgaaatttggtctcgaggttttt 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   attgctagttccagttcaggtcccgcgtcctgcgtaacgaaatttggtctcgaggttttt 64

                                                                       
Query: 173 ccggttgatcccctcccccgcttttttttttcacgaaacttctctcaattatcgtcgtca 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ccggttgatcccctcccccgcttttttttttcacgaaacttctctcaattatcgtcgtca 124

                                                                       
Query: 233 tagagaacgtggttttctctccagtaaaggaataaacggggaagctctaaacagagggta 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tagagaacgtggttttctctccagtaaaggaataaacggggaagctctaaacagagggta 184

                                                                       
Query: 293 cattcattcttgtctaacttaagatgcgcaggtctgttgatgggagttgggaatggtact 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 cattcattcttgtctaacttaagatgcgcaggtctgttgatgggagttgggaatggtact 244

                                                                       
Query: 353 cagtaagtagttttgcttagggtaggtacatactgtttataaaaaattttaggttgggtt 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cagtaagtagttttgcttagggtaggtacatactgtttataaaaaattttaggttgggtt 304

                                                                       
Query: 413 aagttcagtccgatagtaatgagtattgttccagtagaatacaatctcctcctctctcag 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aagttcagtccgatagtaatgagtattgttccagtagaatacaatctcctcctctctcag 364

                                                                       
Query: 473 ggtccgaaatgtatttgtacataaa-ccctcgcttg-cacgaccctaatcngtac-attg 529
           ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||| ||||
Sbjct: 365 ggtccgaaatgtatttgtacataaaaccctcgcttgacacgaccctaatcggtaccattg 424

                                                                       
Query: 530 tcaatgtatctga-ttttggtagtcgccattgtttgatgcatttttcttcaataaatcgg 588
           ||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 425 tcaatgtatctgaattttggtagtcgccattgtttgatgcatttttctcgaataaatcgg 484

                                                                       
Query: 589 -atactctttgatgct-aactcaatcggatcatcgatggcagctatgggctttatttggt 646
            ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 485 gatactctttgatgctcaactcaatcggatcatcgatggcagctatggcctttatt-ggt 543

                                                                       
Query: 647 tgatccgatgaaaagggttatttttagggctggcaaaatgaccccaaggtttcaagattt 706
           |||| |||||||  || ||||||||||| |||||||| |||| | | |||| ||||  ||
Sbjct: 544 tgattcgatgaagtgg-ttatttttagg-ctggcaaagtgacgcgagggtt-caagtatt 600

                                 
Query: 707 ggagattcttttattggaaaat 728
           |  ||| |||||||||||||||
Sbjct: 601 gaggatacttttattggaaaat 622


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8897
Number of Sequences: 1807
Number of extensions: 8897
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)