BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC42ZF10RM1.SCF screened BAC_end (925 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1243 950 0.0 >3x_Contig1243 Length = 5571 Score = 950 bits (479), Expect = 0.0 Identities = 596/622 (95%), Gaps = 10/622 (1%) Strand = Plus / Plus Query: 113 attgctagttccagttcaggtcccgcgtcctgcgtaacgaaatttggtctcgaggttttt 172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5 attgctagttccagttcaggtcccgcgtcctgcgtaacgaaatttggtctcgaggttttt 64 Query: 173 ccggttgatcccctcccccgcttttttttttcacgaaacttctctcaattatcgtcgtca 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65 ccggttgatcccctcccccgcttttttttttcacgaaacttctctcaattatcgtcgtca 124 Query: 233 tagagaacgtggttttctctccagtaaaggaataaacggggaagctctaaacagagggta 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 tagagaacgtggttttctctccagtaaaggaataaacggggaagctctaaacagagggta 184 Query: 293 cattcattcttgtctaacttaagatgcgcaggtctgttgatgggagttgggaatggtact 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 cattcattcttgtctaacttaagatgcgcaggtctgttgatgggagttgggaatggtact 244 Query: 353 cagtaagtagttttgcttagggtaggtacatactgtttataaaaaattttaggttgggtt 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 cagtaagtagttttgcttagggtaggtacatactgtttataaaaaattttaggttgggtt 304 Query: 413 aagttcagtccgatagtaatgagtattgttccagtagaatacaatctcctcctctctcag 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 aagttcagtccgatagtaatgagtattgttccagtagaatacaatctcctcctctctcag 364 Query: 473 ggtccgaaatgtatttgtacataaa-ccctcgcttg-cacgaccctaatcngtac-attg 529 ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||| |||| Sbjct: 365 ggtccgaaatgtatttgtacataaaaccctcgcttgacacgaccctaatcggtaccattg 424 Query: 530 tcaatgtatctga-ttttggtagtcgccattgtttgatgcatttttcttcaataaatcgg 588 ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 425 tcaatgtatctgaattttggtagtcgccattgtttgatgcatttttctcgaataaatcgg 484 Query: 589 -atactctttgatgct-aactcaatcggatcatcgatggcagctatgggctttatttggt 646 ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| Sbjct: 485 gatactctttgatgctcaactcaatcggatcatcgatggcagctatggcctttatt-ggt 543 Query: 647 tgatccgatgaaaagggttatttttagggctggcaaaatgaccccaaggtttcaagattt 706 |||| ||||||| || ||||||||||| |||||||| |||| | | |||| |||| || Sbjct: 544 tgattcgatgaagtgg-ttatttttagg-ctggcaaagtgacgcgagggtt-caagtatt 600 Query: 707 ggagattcttttattggaaaat 728 | ||| ||||||||||||||| Sbjct: 601 gaggatacttttattggaaaat 622 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8897 Number of Sequences: 1807 Number of extensions: 8897 Number of successful extensions: 66 Number of sequences better than 1.0e-20: 1 length of query: 925 length of database: 10,358,551 effective HSP length: 16 effective length of query: 909 effective length of database: 10,329,639 effective search space: 9389641851 effective search space used: 9389641851 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)