BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF11FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1415 0.0
>3x_Contig1515
Length = 8855
Score = 1415 bits (714), Expect = 0.0
Identities = 776/793 (97%), Gaps = 3/793 (0%)
Strand = Plus / Plus
Query: 85 cttcccaaactaaagcaatctacttctgctgagataaccaaaaatttcaaaaaactagcg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6892 cttcccaaactaaagcaatctacttctgctgagataaccaaaaatttcaaaaaactagcg 6951
Query: 145 aagaaataccatcctgataagaatccaaagtacaggaagttgtatgaacgaattaacttg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6952 aagaaataccatcctgataagaatccaaagtacaggaagttgtatgaacgaattaacttg 7011
Query: 205 atcaccaagctattatctgatgaaggtcatcgtaagacttacgactactatttgaaaaat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7012 atcaccaagctattatctgatgaaggtcatcgtaagacttacgactactatttgaaaaat 7071
Query: 265 ggatttcctaaatatgactacaaaaaaggtgggtttttcttcaatagggttacaccctct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7072 ggatttcctaaatatgactacaaaaaaggtgggtttttcttcaatagggttacaccctct 7131
Query: 325 gtatggttcaccttcttctttctgtatgttcttgctggtgtaattcatcttgtgctattg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7132 gtatggttcaccttcttctttctgtatgttcttgctggtgtaattcatcttgtgctattg 7191
Query: 385 aaactccataacaacgcaaataagaaaagaattgagaacttcgtggctaaggtcagagaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7192 aaactccataacaacgcaaataagaaaagaattgagaacttcgtggctaaggtcagagaa 7251
Query: 445 caggacacaaccaattcattgggtgaatctaaattggtcttcaaagagtctgaggactcg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7252 caggacacaaccaattcattgggtgaatctaaattggtcttcaaagagtctgaggactcg 7311
Query: 505 gaagataaacaattacttgtgagattcggtgaagtgttcgtcattcagcctgacgaatca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7312 gaagataaacaattacttgtgagattcggtgaagtgttcgtcattcagcctgacgaatca 7371
Query: 565 ttggcgaaaatatccacggacgacatcattgatcctggtatcaacgacactctattggtt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7372 ttggcgaaaatatccacggacgacatcattgatcctggtatcaacgacactctattggtt 7431
Query: 625 aaattacctaaatggatctggaataaaaccttaggtaagttcatcaatattggcacttcg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7432 aaattacctaaatggatctggaataaaaccttaggtaagttcatcaatattggcacttcg 7491
Query: 685 aaaagtcaac-acccaatataggctctccaaacataaataaaaggaacagcaatatatac 743
|||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||| ||
Sbjct: 7492 aaaagtcaacaacccaataaaggctctccaaacaaaaataaaaggaacagcaaaataaac 7551
Query: 744 tcgaaagcccaatgaaatgtgaatagcctatgaacctataaagggctttaataattcttg 803
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7552 tcgaaagcccaatgaaatgtgaatagcctaggaacctataaagggctttaataattcttg 7611
Query: 804 gtaatctatacgncaatattattcggcccattaatagaaaactaaattaattttttattc 863
||||||||||| || || |||||||| ||| ||||||||||||| ||||| | ||| ||
Sbjct: 7612 ttaatctatacgtcatta-tattcggcacataaatagaaaactaatttaatatatta-tc 7669
Query: 864 tttatttagggcc 876
|||||| ||||||
Sbjct: 7670 tttattaagggcc 7682
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7873
Number of Sequences: 1807
Number of extensions: 7873
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)