BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZF11RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig515 841 0.0
3x_Contig1706 553 e-157
>3x_Contig515
Length = 1717
Score = 841 bits (424), Expect = 0.0
Identities = 507/528 (96%), Gaps = 6/528 (1%)
Strand = Plus / Minus
Query: 414 gatgtcgaagaaaaatttgagaaatgatgattgtgctagcgttattgactgcattgaatg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1717 gatgtcgaagaaaaatttgagaaatgatgattgtgctagcgttattgactgcattgaatg 1658
Query: 474 gcttgaaatcttttgcagtgaactaaactaccgtgtacatgacttagaacaagaatatga 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1657 gcttgaaatcttttgcagtgaactaaactaccgtgtacatgacttagaacaagaatatga 1598
Query: 534 aaaggtaataatgccaagaacaattgttatcatgattaagggcaaagcaggcatgaaata 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 aaaggtaataatgccaagaacaattgttatcatgattaagggcaaagcaggcatgaaata 1538
Query: 594 tactcaaacccgaagaatcactaccgcttcaagtagtataacgtccagagagttattcat 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 tactcaaacccgaagaatcactaccgcttcaagtagtataacgtccagagagttattcat 1478
Query: 654 caatgcaacaaaattgataaacgagattgataagcaacatggcaagcttgccgggtgtta 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1477 caatgcaacaaaattgataaacgagattgataagcaacatggcaagcttgccggtgttta 1418
Query: 714 ccctttgagagaactctcgttgactctttccaattntgatataatagacaaggngaaaac 773
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 1417 ccctttgagagaactctcgttgactctttccaattttgatataatagacaaggggaaaac 1358
Query: 774 tgtccttgatatgttnncgtatcgagcaatctcaaaatcatctttcactgataacaaacg 833
||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1357 tgtccttgatatgttcggtaatcgagcaatctcaaaatcatcttcaactgataac-aacg 1299
Query: 834 tcgt-aagatagaaggtgaagacatacattcagattcgaaa-gtgggccttatgatgcgt 891
|||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 1298 tcgtaaagatagaaggtgaagacatacattcagattcgaaaggtggcccttatgatgcgt 1239
Query: 892 ctgtttcagaga-attcgagggag-accaccaa-tgcttcttttcctc 936
|||||||||||| | ||||||||| |||||||| |||||||| |||||
Sbjct: 1238 ctgtttcagagacactcgagggagaaccaccaagtgcttcttctcctc 1191
>3x_Contig1706
Length = 16303
Score = 553 bits (279), Expect = e-157
Identities = 286/287 (99%), Gaps = 1/287 (0%)
Strand = Plus / Minus
Query: 44 cttgcttctaattaca-gaaacccaatgcgcaaaccattgtaaagaacaactgtatagat 102
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttgcttctaattacaagaaacccaatgcgcaaaccattgtaaagaacaactgtatagat 242
Query: 103 gatttccttgattgcgggaagtttgaaatcaattccttttggacattgggtggcatacgt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatttccttgattgcgggaagtttgaaatcaattccttttggacattgggtggcatacgt 182
Query: 163 ggaaaggaattaattgatttgatggaacttcccaaagaacattctataaagttcattaga 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggaaaggaattaattgatttgatggaacttcccaaagaacattctataaagttcattaga 122
Query: 223 gattcatggccagtttcaagcgatgacatcagaaaattcatgctcaagaaaatcatatgc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gattcatggccagtttcaagcgatgacatcagaaaattcatgctcaagaaaatcatatgc 62
Query: 283 agagatatacaaaggtctagagagtacaacattaatgaagccgatgt 329
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agagatatacaaaggtctagagagtacaacattaatgaagccgatgt 15
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7239
Number of Sequences: 1807
Number of extensions: 7239
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)