BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG01FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1602 139 1e-32
>3x_Contig1602
Length = 12694
Score = 139 bits (70), Expect = 1e-32
Identities = 128/146 (87%), Gaps = 1/146 (0%)
Strand = Plus / Plus
Query: 627 tgacattactttcaatgtaaccaatcctgcgagttagctgcccaacacgtacgtgacata 686
||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||||||| |
Sbjct: 1 tgacaatactttcaatgta-ccaatcctgcgagtaagctgccgaacacgtacgtgacaaa 59
Query: 687 attaaccagcttcattgtttgattatcaattaaaaagtagccaggaacccccggttgact 746
|| | |||||||||||||||| |||||||| |||||||||| | || | ||| |||||
Sbjct: 60 atcagccagcttcattgtttgtatatcaattgaaaagtagcccaggacacgcggctgact 119
Query: 747 tgtttaacttgtaactaaccttcgct 772
||||||||| ||||||||| ||||||
Sbjct: 120 tgtttaactcgtaactaacgttcgct 145
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8285
Number of Sequences: 1807
Number of extensions: 8285
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)