BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG01RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1635 1451 0.0
>3x_Contig1635
Length = 12349
Score = 1451 bits (732), Expect = 0.0
Identities = 850/877 (96%), Gaps = 11/877 (1%)
Strand = Plus / Minus
Query: 44 gctttactcgaagtgataaaaagggtgacagtaaaaaagttt-aaggtaagaactttctg 102
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7603 gctttactcgaagtgataaaaagggtgacagtaaaaaagtttcaaggtaagaactttctg 7544
Query: 103 taaactctcatgatcgggtggagcgaacagtaaccggttaatttagtaataccttacact 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7543 taaactctcatgatcgggtggagcgaacagtaaccggttaatttagtaataccttacact 7484
Query: 163 tccagagaaaagcccggtactttccagtttgcccagaatttagcagtcaaacggagtctt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7483 tccagagaaaagcccggtactttccagtttgcccagaatttagcagtcaaacggagtctt 7424
Query: 223 tttgagtcttttcttccaaaatcttacaaacattatgatctagcaagaaaaacatcacaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7423 tttgagtcttttcttccaaaatcttacaaacattatgatctagcaagaaaaacatcacaa 7364
Query: 283 tttcatgtcctctttcttgagcggatgggcttgctgtatctattttggttatgacaacct 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7363 tttcatgtcctctttcttgagcggatgggcttgctgtatctattttggttatgacaacct 7304
Query: 343 gcaaaattaggagaagtcacgtgctattaagtttggtagcgcccaacagttcagcatcaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7303 gcaaaattaggagaagtcacgtgctattaagtttggtagcgcccaacagttcagcatcaa 7244
Query: 403 gtgcatgtattccgtatccacagataagtaaccaaatgcctgttaatgttcacctacggc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7243 gtgcatgtattccgtatccacagataagtaaccaaatgcctgttaatgttcacctacggc 7184
Query: 463 ttgacaggtaatatgtgtttaattttagatgtgagatgtccccacaaatgcgttggcatg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7183 ttgacaggtaatatgtgtttaattttagatgtgagatgtccccacaaatgcgttggcatg 7124
Query: 523 ttgcatcacctgcattagcttcttacttggccacccattatgttacccggtcacttttca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7123 ttgcatcacctgcattagcttcttacttggccacccattatgttacccggtcacttttca 7064
Query: 583 tggaggccctcanatagctgaggtattgaatgtctgaaactgggaaacagcgcctaaagt 642
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7063 tggaggccctcaaatagctgaggtattgaatgtctgaaactgggaaacagcgcctaaagt 7004
Query: 643 aaatacgataagttaccccgctcttttgaaacacctcaagactttcgcaat-aaatacca 701
|||||||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 7003 aaatacgaaaagtta-cccgctcttttgaacaacctcaagactttcgcaataaaatacca 6945
Query: 702 gaagaagcagtgggtctggcataaatggagatcttcaaaaattttccgattagctcacca 761
||||| |||||||||||| |||||||||||||||| ||||||||||||| |||||||||
Sbjct: 6944 gaagaggcagtgggtctgcaataaatggagatcttc-aaaattttccgataagctcacca 6886
Query: 762 ggacttagcgcantggtttttgtcgcttactgaaaggggcacg-acagttttcaaaaa-- 818
| ||| |||||| ||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 6885 gaactcagcgcaatgg-ttttgtcgcttactgaaa-gggcacgaacagttttcaaaaaat 6828
Query: 819 taaaaaaaatgatatgaagctcctctgttactt-cactggaaagtcacgtgacaaatacc 877
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 6827 aaaaaaaaatgatatgagcttcctctgttacttccactggaaagtcacgtgacaaatacc 6768
Query: 878 gactatttacctt-agaattatagttaatatagttga 913
||||||||||||| ||||| |||||||||||||||||
Sbjct: 6767 gactatttaccttcagaatcatagttaatatagttga 6731
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6734
Number of Sequences: 1807
Number of extensions: 6734
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)