BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG02FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig739 1126 0.0
>3x_Contig739
Length = 2501
Score = 1126 bits (568), Expect = 0.0
Identities = 652/675 (96%), Gaps = 4/675 (0%)
Strand = Plus / Plus
Query: 92 tatttgactcacgatataacagagtaccccatcgaggtgaggaggcagatgttgtttttg 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tatttgactcacgatataacagagtaccccatcgaggtgaggaggcagatgttgtttttg 687
Query: 152 gagacttttttgctttgctcgtcaacaaataagaccacatacgtttgtgccaggtgtgtg 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gagacttttttgctttgctcgtcaacaaataagaccacatacgtttgtgccaggtgtgtg 747
Query: 212 aaaagagaacaacttatatctgcgagacggaaatctggtgtaagtgataatctgctttgg 271
||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aaaagagaacaacgtagagctgcgagacggaaatctggtgtaagtgataatctgctttgg 807
Query: 272 tgtaacaacgataacaagagagctattgtttttaatatcaaacaagtcctcttaatgaaa 331
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 808 tgtaacaacgataacaagagagctattgtttttaatagcaaacaagtcctcttaatgaaa 867
Query: 332 gaacatgaatgcaatgaaaactctaaaaatttctctttgatgacccgtatcgtatgttac 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gaacatgaatgcaatgaaaactctaaaaatttctctttgatgacccgtatcgtatgttac 927
Query: 392 tgcagacatcataaggagccagaaggtttcaaggtgttgatggttctacgagatgcagat 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 tgcagacatcataaggagccagaaggtttcaaggtgttgatggttctacgagatgcagat 987
Query: 452 gataatatcttggcaagaacagtgacaaacagtattgttattatggataaaaagacgaca 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 gataatatcttggcaagaacagtgacaaacagtattgttattatggataaaaagacgaca 1047
Query: 512 agcaagggtaaatctagtgacaaccgtaccagcgatggttatgtcaaggatgaagattct 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 agcaagggtaaatctagtgacaaccgtaccagcgatggttatgtcaaggatgaagattct 1107
Query: 572 atgacaggacaagccagcgattatagtaactccgaatcctacgtgagtatgaaagctgag 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 atgacaggacaagccagcgattatagtaactccgaatcctacgtgagtatgaaagctgag 1167
Query: 632 gactcttcagcgccagtacggctttttattacaaaatgtatgcgcctttcc-actttcat 690
||||||||||||||||||||||||| ||| ||||| |||||| ||| ||| |||| |||
Sbjct: 1168 gactcttcagcgccagtacggctttctataccaaaaggtatgc-cctctccaacttccat 1226
Query: 691 tacngaggattcttcaagaaatgtccattccggaccttgttccattataccccgactact 750
||| |||||||||||| |||||||||| || |||| || |||| || | ||||||||||
Sbjct: 1227 tacggaggattcttcagaaaatgtccatacc-gaccatggtccagta-aacccgactact 1284
Query: 751 tctggctttttccac 765
||||||||||||||
Sbjct: 1285 cctggctttttccac 1299
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,379
Number of Sequences: 1807
Number of extensions: 15379
Number of successful extensions: 362
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)