BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG03FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1170 678 0.0
>3x_Contig1170
Length = 4668
Score = 678 bits (342), Expect = 0.0
Identities = 438/465 (94%), Gaps = 4/465 (0%)
Strand = Plus / Plus
Query: 383 ggtgaaggaagatgcaatgtagaggggaagccgcatcacggccatttccccttctttttt 442
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ggtgaaggaagatgcaatgtagaggggaagccgcagcacggccatttccccttctttttt 60
Query: 443 ttttgttacaccgtcaacgatgtataagtattagattcttgtacgaattcttgcgacaaa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttgttacaccgtcaacgatgtataagtattagattcttgtacgaattcttgcgacaaa 120
Query: 503 ggtcttccattattgagcgagccatacgatagcacggccgcagaggaagtagacgatgat 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtcttccattattgagcgagccatacgatagcacggccgcagaggaagtagacgatgat 180
Query: 563 ggtgaatgagagccatccaattcagagagaaacttcgaatcgtgaaccaaagattcttca 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtgaatgagagccatccaattcagagagaaacttcgaatcgtgaaccaaagattcttca 240
Query: 623 nagtagtagatggatgcagaaatgcgtaccactccgatggttagcactatgattccgaac 682
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 241 aagtagtagatggatgcagaaatgcgtaccactccgatggttagcactatgaaaccgaac 300
Query: 683 acaagccctgtgtataatatcttggctgtattcggtacccattgaattgtgattgaacat 742
||||||||||||||||| |||| |||||||| ||||| ||| ||||| ||||| ||||||
Sbjct: 301 acaagccctgtgtataaaatctcggctgtatgcggta-ccaatgaatcgtgatagaacat 359
Query: 743 tgtactgttcaagattggtgttcaatttatagatggagaacccatacggttaaaggttcg 802
|||||||||||||||| || |||| ||||||||||||||| || |||| |||||| |||
Sbjct: 360 tgtactgttcaagatt-gtagtcaaattatagatggagaacacaaacggataaaggatcg 418
Query: 803 atgtttaaagaatggaaaagccctggcgttcaacatattcaactg 847
|||| |||| ||| |||||||| |||||||||| || ||||||
Sbjct: 419 atgtagaaag-atgagaaagccct-gcgttcaacaaatacaactg 461
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,913
Number of Sequences: 1807
Number of extensions: 15913
Number of successful extensions: 305
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)