BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZG03RM1.SCF screened BAC_end
         (898 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1107                                                        1588   0.0  

>3x_Contig1107 
          Length = 6096

 Score = 1588 bits (801), Expect = 0.0
 Identities = 849/857 (99%), Gaps = 6/857 (0%)
 Strand = Plus / Minus

                                                                        
Query: 44   cttgtttgtttttcaattcatcaaatcttccattggatttcgataatggcgtactaaatt 103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1875 cttgtttgtttttcaattcatcaaatcttccattggatttcgataatggcgtactaaatt 1816

                                                                        
Query: 104  tgtccaggtgatcaacatcatcgatcttaaagatgtcaggacaaaactcattcaagtttg 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1815 tgtccaggtgatcaacatcatcgatcttaaagatgtcaggacaaaactcattcaagtttg 1756

                                                                        
Query: 164  ttaggtccaaagtgtaaataatggtaccggctcccatgtcgacatcagaagtgcttacat 223
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1755 ttaggtccaaagtgtaaataatggtaccggctcccatgtcgacatcagaagtgcgtacat 1696

                                                                        
Query: 224  cggtgctgttaccaacagcataatcaaacttgtcaccacccatgattagcagtttattat 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1695 cggtgctgttaccaacagcataatcaaacttgtcaccacccatgattagcagtttattat 1636

                                                                        
Query: 284  ttgataacagagtgagagagtgtccggatcttgctcttggaatcatattattaaaagttg 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1635 ttgataacagagtgagagagtgtccggatcttgctcttggaatcatattattaaaagttg 1576

                                                                        
Query: 344  gtagtttgaaccattttagactcctgaagtttaagaaatacacggcgtttgaataattgt 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1575 gtagtttgaaccattttagactcctgaagtttaagaaatacacggcgtttgaataattgt 1516

                                                                        
Query: 404  cctgcgcatccttcccaccaaaaacacacattaaatcgcggtatatgatagcagcatgct 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1515 cctgcgcatccttcccaccaaaaacacacattaaatcgcggtatatgatagcagcatgct 1456

                                                                        
Query: 464  cttgtaatggcggtgggatgtttcctgtagtctgcactacacaccaatcattggcagctg 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1455 cttgtaatggcggtgggatgtttcctgtagtctgcactacacaccaatcattggcagctg 1396

                                                                        
Query: 524  gatcaaacataaagacttcgttagttaaaccttgaggagtatcaccaccaaatacccaca 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1395 gatcaaacataaagacttcgttagttaaaccttgaggagtatcaccaccaaatacccaca 1336

                                                                        
Query: 584  acttatgatcaaacgagatcatcgtgtggttagccaagggtggtggcatgaaagttgccg 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1335 acttatgatcaaacgagatcatcgtgtggttagccaagggtggtggcatgaaagttgccg 1276

                                                                        
Query: 644  gtttaataaattcccagtgagaatcagatctccggaaagatgagaggtcaaactctgcta 703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1275 gtttaataaattcccagtgagaatcagatctccggaaagatgagaggtcaaactctgcta 1216

                                                                        
Query: 704  aatcattaaaataggtatcatcaaactgaccaccaaacacataaagtttgggttttcatt 763
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 1215 aatcattaaaataggtatcatcaaactgaccaccaaacacataaagttt-ggttttca-t 1158

                                                                        
Query: 764  ttggttcgcagcaattatactgattttgtgaccgtatctaccaagtgggtcta-gtcctt 822
            |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 1157 ttggttcgcagcaattatactgattttgtgaccgtatctaccaagt-ggtctaggtcctt 1099

                                                                        
Query: 823  gaggtgttggtatggtccatttgttgaaagttgatattgaacaaatat-tgtcatcgtcc 881
            ||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||
Sbjct: 1098 gaggtgttggtatggtccatttg-tgagagttgatattgaacaaatatatgtcatcgtcc 1040

                             
Query: 882  atcaaaccggcatcatt 898
            |||||||||||||||||
Sbjct: 1039 atcaaaccggcatcatt 1023


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6538
Number of Sequences: 1807
Number of extensions: 6538
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)