BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG04FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1800 1181 0.0
>3x_Contig1800
Length = 38778
Score = 1181 bits (596), Expect = 0.0
Identities = 712/745 (95%), Gaps = 5/745 (0%)
Strand = Plus / Plus
Query: 86 tttgaccaggtggttcatgtatttgaacgtgatcagcttgttatcttctcccgatccaac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21873 tttgaccaggtggttcatgtatttgaacgtgatcagcttgttatcttctcccgatccaac 21932
Query: 146 tccgcaagcggagatcttccagcagcttgattttgatttctgtccttccagtgaaaagaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21933 tccgcaagcggagatcttccagcagcttgattttgatttctgtccttccagtgaaaagaa 21992
Query: 206 tcttttggctcgagaagaactacgcgacatacagtataccagtggaatggagccagctgt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21993 tcttttggctcgagaagaactacgcgacatacagtataccagtggaatggagccagctgt 22052
Query: 266 actttcgtatctcgcgaaagtatctcaaatggttttcgacaaggcaaagatcgattcggc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22053 actttcgtatctcgcgaaagtatctcaaatggttttcgacaaggcaaagatcgattcggc 22112
Query: 326 atcggaaatggagactcttttatccaacgctatagagctagattatgtgatctcaagcta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22113 atcggaaatggagactcttttatccaacgctatagagctagattatgtgatctcaagcta 22172
Query: 386 tctggtgaactctgaaaaagaaagagatgctatcattagaaaacaacaacataatagtcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22173 tctggtgaactctgaaaaagaaagagatgctatcattagaaaacaacaacataatagtcc 22232
Query: 446 ttctaatgatgtgaaaaaaaggatccagatgtaccagtttttacgctccaccaacctgat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22233 ttctaatgatgtgaaaaaaaggatccagatgtaccagtttttacgctccaccaacctgat 22292
Query: 506 cttcggtctgaccgggttactaattctaagacgtcgggtgatgaacctaccacaagatac 565
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22293 cttcggtctgaccgggttactaattctaagacgtcgggtgatgaacctaccacaagata- 22351
Query: 566 cccggctaataaaag-attgttaattagaattacctcgttgttcagcgaaaaagtaccgt 624
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22352 cccggctaataaaagaattgttaattagaattacctcgttgttcagcgaaaaagtaccgt 22411
Query: 625 tagattctccggcacagncgngccctctactttgnatcttttggtgccggtggtgaacta 684
||||||||||||||||| || ||| ||||||| |||||||| || |||| ||||||||
Sbjct: 22412 tagattctccggcacagtcgtgcctcttactttgtatcttttgttg-cggttgtgaacta 22470
Query: 685 atcgacgattcactagttccatctaggaccgatttattttaggcattttcacagcctctg 744
|||||||||||||||| |||||||| ||||||| ||||| | |||| | |||||||||||
Sbjct: 22471 atcgacgattcactag-tccatctaagaccgatatatttaaagcatctccacagcctctg 22529
Query: 745 taagaacggcatttttgttccttgcatgccgaaaaaagttttggaagaatgcctggccaa 804
||||| |||||| | || | || |||| ||||||||||| ||||||| || |||| |||
Sbjct: 22530 taagagcggcatatctggtgctgtcatggcgaaaaaagttatggaagagtg-ctgggcaa 22588
Query: 805 caaagagaacttgttgggaagttct 829
|||||| ||||| |||||||||||
Sbjct: 22589 caaagaagacttggtgggaagttct 22613
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5840
Number of Sequences: 1807
Number of extensions: 5840
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)