BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC42ZG04RM1.SCF screened BAC_end (942 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig809 1350 0.0 >3x_Contig809 Length = 3151 Score = 1350 bits (681), Expect = 0.0 Identities = 708/715 (99%), Gaps = 2/715 (0%) Strand = Plus / Minus Query: 43 ctttaaattaagatttatttcttttattcgctattgagatgatatgagcaaagaggagga 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3076 ctttaaattaagatttatttcttttattcgctattgagatgatatgagcaaagaggagga 3017 Query: 103 gaaagctaaacaagggaagcatgacgaggtctaaagccttctcgtaataggatataatat 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3016 gaaagctaaacaagggaagcatgacgaggtctaaagccttctcgtaataggatataatat 2957 Query: 163 cattgctgtatacttaaatactcttacatatatgttttgatcacgagtataattttatca 222 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct: 2956 cattgctgtatacttaaatactcttacatatatgttttgatcacgagtataatttgagca 2897 Query: 223 ctctatcctcaatattgtccaggacagaaatgtgttggaaaaccgtgatatcgtttgcca 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2896 ctctatcctcaatattgtccaggacagaaatgtgttggaaaaccgtgatatcgtttgcca 2837 Query: 283 atgccttcatttggtccttaggatttggtccaccgggactttgacttaattgctgttgtt 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2836 atgccttcatttggtccttaggatttggtccaccgggactttgacttaattgctgttgtt 2777 Query: 343 gagccgacacatttaatttactgagtctattaccaccgaatagaacgttataaactggtg 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2776 gagccgacacatttaatttactgagtctattaccaccgaatagaacgttataaactggtg 2717 Query: 403 tcaaaccacccattgaaatgatataccatgacatactactcacccagcgtacgtctaaat 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2716 tcaaaccacccattgaaatgatataccatgacatactactcacccagcgtacgtctaaat 2657 Query: 463 catcagttctgactgaactntgtagcatttgcttgaatctaatggtaagtgggaatggaa 522 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 2656 catcagttctgactgaactttgtagcatttgcttgaatctaatggtaagtgggaatggaa 2597 Query: 523 gcttcattaatacgaatcctgcaaagaagtaattgacccaccacattataactgtttgag 582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2596 gcttcattaatacgaatcctgcaaagaagtaattgacccaccacattataactgtttgag 2537 Query: 583 gaatatagttaaccaaattccccanagccatggaagtcattgcgtcggtcataccgggac 642 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 2536 gaatatagttaaccaaattccccaaagccatggaagtcattgcgtcggtcataccgggac 2477 Query: 643 ttgtgaaagggttttccatcgccggcttttcatc-ttagctggcttgattgcccaggtat 701 |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| Sbjct: 2476 ttgtgaaagggttttccatcgccgtcttttcatctttagctggcttgattg-ccaggtat 2418 Query: 702 ttcccatcagctagcacttgcgctaaatattcctgcctcatcttaaatgattctg 756 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2417 ttcccatcagctagcacttgcgctaaatattcctgcctcatcttaaatgattctg 2363 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6025 Number of Sequences: 1807 Number of extensions: 6025 Number of successful extensions: 43 Number of sequences better than 1.0e-20: 1 length of query: 942 length of database: 10,358,551 effective HSP length: 16 effective length of query: 926 effective length of database: 10,329,639 effective search space: 9565245714 effective search space used: 9565245714 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)