BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZG04RM1.SCF screened BAC_end
         (942 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig809                                                         1350   0.0  

>3x_Contig809 
          Length = 3151

 Score = 1350 bits (681), Expect = 0.0
 Identities = 708/715 (99%), Gaps = 2/715 (0%)
 Strand = Plus / Minus

                                                                        
Query: 43   ctttaaattaagatttatttcttttattcgctattgagatgatatgagcaaagaggagga 102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3076 ctttaaattaagatttatttcttttattcgctattgagatgatatgagcaaagaggagga 3017

                                                                        
Query: 103  gaaagctaaacaagggaagcatgacgaggtctaaagccttctcgtaataggatataatat 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3016 gaaagctaaacaagggaagcatgacgaggtctaaagccttctcgtaataggatataatat 2957

                                                                        
Query: 163  cattgctgtatacttaaatactcttacatatatgttttgatcacgagtataattttatca 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 2956 cattgctgtatacttaaatactcttacatatatgttttgatcacgagtataatttgagca 2897

                                                                        
Query: 223  ctctatcctcaatattgtccaggacagaaatgtgttggaaaaccgtgatatcgtttgcca 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ctctatcctcaatattgtccaggacagaaatgtgttggaaaaccgtgatatcgtttgcca 2837

                                                                        
Query: 283  atgccttcatttggtccttaggatttggtccaccgggactttgacttaattgctgttgtt 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2836 atgccttcatttggtccttaggatttggtccaccgggactttgacttaattgctgttgtt 2777

                                                                        
Query: 343  gagccgacacatttaatttactgagtctattaccaccgaatagaacgttataaactggtg 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2776 gagccgacacatttaatttactgagtctattaccaccgaatagaacgttataaactggtg 2717

                                                                        
Query: 403  tcaaaccacccattgaaatgatataccatgacatactactcacccagcgtacgtctaaat 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2716 tcaaaccacccattgaaatgatataccatgacatactactcacccagcgtacgtctaaat 2657

                                                                        
Query: 463  catcagttctgactgaactntgtagcatttgcttgaatctaatggtaagtgggaatggaa 522
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2656 catcagttctgactgaactttgtagcatttgcttgaatctaatggtaagtgggaatggaa 2597

                                                                        
Query: 523  gcttcattaatacgaatcctgcaaagaagtaattgacccaccacattataactgtttgag 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2596 gcttcattaatacgaatcctgcaaagaagtaattgacccaccacattataactgtttgag 2537

                                                                        
Query: 583  gaatatagttaaccaaattccccanagccatggaagtcattgcgtcggtcataccgggac 642
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2536 gaatatagttaaccaaattccccaaagccatggaagtcattgcgtcggtcataccgggac 2477

                                                                        
Query: 643  ttgtgaaagggttttccatcgccggcttttcatc-ttagctggcttgattgcccaggtat 701
            |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||
Sbjct: 2476 ttgtgaaagggttttccatcgccgtcttttcatctttagctggcttgattg-ccaggtat 2418

                                                                   
Query: 702  ttcccatcagctagcacttgcgctaaatattcctgcctcatcttaaatgattctg 756
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2417 ttcccatcagctagcacttgcgctaaatattcctgcctcatcttaaatgattctg 2363


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6025
Number of Sequences: 1807
Number of extensions: 6025
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)