BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG05FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 1316 0.0
>3x_Contig1281
Length = 7825
Score = 1316 bits (664), Expect = 0.0
Identities = 711/724 (98%), Gaps = 2/724 (0%)
Strand = Plus / Minus
Query: 86 taacatattgtgaagaatgactggttgcagattttgggagagatgccaatagctgcaaca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1468 taacatattgtgaagaatgactggttgcagattttgggagagatgccaatagctgcaaca 1409
Query: 146 tattttcgctcaaaatcttacttatcacagcttgaacatctgcctcccatgattggtcga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1408 tattttcgctcaaaatcttacttatcacagcttgaacatctgcctcccatgattggtcga 1349
Query: 206 gagataataaaaactccaagtattccgtgaacaatagcatacccgcatggaccactggcc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1348 gagataataaaaactccaagtattccgtgaacaatagcatacccgcatggaccactggcc 1289
Query: 266 aattcttttgttcataactctctctcaaatattttgtaaagagaatgtaacactcatcta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1288 aattcttttgttcataactctctctcaaatattttgtaaagagaatgtaacactcatcta 1229
Query: 326 acaatgcgcctgagacataatccggtgtagcatcaatttcataaatgcaccgtgatctct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1228 acaatgcgcctgagacataatccggtgtagcatcaatttcataaatgcaccgtgatctct 1169
Query: 386 ggaatttcacaaaccacgaaatgaataacatgtattcaatcttatgcaatggtaattgat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1168 ggaatttcacaaaccacgaaatgaataacatgtattcaatcttatgcaatggtaattgat 1109
Query: 446 cttgaatttcactcgtaaaactatctgtggcattttgcaataacaaattgaaactggaat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 cttgaatttcactcgtaaaactatctgtggcattttgcaataacaaattgaaactggaat 1049
Query: 506 caacaaaatctgccaaaaactcttttatgctagtaatgttgtcagaagacatgtaaatag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 caacaaaatctgccaaaaactcttttatgctagtaatgttgtcagaagacatgtaaatag 989
Query: 566 aattaccttcagtactaaaaaagctgctactgagtccttcaataacatcgagtctcatag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 aattaccttcagtactaaaaaagctgctactgagtccttcaataacatcgagtctcatag 929
Query: 626 tgatggttttattccattttttttcttgagtctaactctttgtatgccgcatcatcacgc 685
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 928 tgatggttttattcca-tttttttcttgagtctaactcttgtaatgccgcatcatcacgc 870
Query: 686 atgttgacagaattactaggcattgtcaatcgcgtattttgaggtgtctgtatagacatt 745
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 869 atgttgacagaattactagcaattgtcaatcgcgtattttgaggtgtctgtatagacaat 810
Query: 746 aaaccggc-aatctagaatgacgagaaagagtatttcttattacattaagcttcttttca 804
|||||| | |||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 809 aaaccgccaaatctagaatgacgagaagaagtattctttattacattaagcttcttttca 750
Query: 805 tgtt 808
||||
Sbjct: 749 tgtt 746
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6974
Number of Sequences: 1807
Number of extensions: 6974
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)