BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG05RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1639 1516 0.0
>3x_Contig1639
Length = 14140
Score = 1516 bits (765), Expect = 0.0
Identities = 839/859 (97%), Gaps = 4/859 (0%)
Strand = Plus / Minus
Query: 45 gcttgaaccagaaagagaaatgtcaactttattaatcgtatctacttacgtaaatagcga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4765 gcttgaaccagaaagagaaatgtcaactttattaatcgtatctacttacgtaaatagcga 4706
Query: 105 gattcaaatatgagtaataaattattcaggtatagatgaagcctttctaacagtgtaagg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4705 gattcaaatatgagtaataaattattcaggtatagatgaagcctttctaacagtgtaagg 4646
Query: 165 aaatctttttgtgtatcgaaccggtgcttatcatcatccggatgtcataacaagatggat 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4645 aaatctttttgtgtatcgaaccggtgcttatcatcatccggatgtcataacaagatggag 4586
Query: 225 ggtggaaacaaagacaaagccaatcaatgggtcacatgatcagattattgtttcttctat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4585 ggtggaaacaaagacaaagccaatcaatgggtcacatgatcagattattgtttcttctat 4526
Query: 285 tttacctaaaatgactcctagtatcatcaatgattcaatggtagaaaagggtctaactag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4525 tttacctaaaatgactcctagtatcatcaatgattcaatggtagaaaagggtctaactag 4466
Query: 345 atgtctcctgtatctcgaactatctagtgaacgtgcatacgtcgtgtttgcaaccttcaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 atgtctcctgtatctcgaactatctagtgaacgtgcatacgtcgtgtttgcaaccttcaa 4406
Query: 405 ctcctctctagaatggtcgagctactgcaagatcttcaagccattctgccgtttcctgaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4405 ctcctctctagaatggtcgagctactgcaagatcttcaagccattctgccgtttcctgaa 4346
Query: 465 gatgccaaatcatcacctcacgttatagagtggttgaacgtattaataggcaaaacaaac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4345 gatgccaaatcatcacctcacgttatagagtggttgaacgtattaataggcaaaacaaac 4286
Query: 525 gaaccaattcaatgtttcttgcctatatggtacttttcgtacttagaatcctactctaaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285 gaaccaattcaatgtttcttgcctatatggtacttttcgtacttagaatcctactctaaa 4226
Query: 585 cggtttccaaatgtaacggttgctgacaaatggaaattagttcaagattggttgaataat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 cggtttccaaatgtaacggttgctgacaaatggaaattagttcaagattggttgaataat 4166
Query: 645 tcttcgntgttactgaatactggtgtttctgcgttgacattaggtgaaagttatactttt 704
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4165 ccttcgttgttactgaatactggtgtttctgcgttgacattaggtgaaagttatactttt 4106
Query: 705 caattgcctgagcattgggcccgctcaatagaggaatttgggctctggatccagcttgat 764
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4105 caattgcctgagcaatgggcccgctcaatagaggaatttgggctctggatccagcttgat 4046
Query: 765 gaaccttaccgnag-aaagaagtacctttctatgctcagctaagaattattggtc-gtga 822
||||||||||| || ||||| ||||||||||||||||||||||||| || ||||| ||||
Sbjct: 4045 gaaccttaccggagaaaagatgtacctttctatgctcagctaagaa-taatggtcggtga 3987
Query: 823 ccaggatgaaacgtttgaatttctactggtcgattacgatttggaaattgtcactgagtg 882
| ||||||| |||||||||| ||||||| ||||| ||||| | |||| ||||||||||||
Sbjct: 3986 cgaggatgagacgtttgaatatctactgttcgataacgatgt-gaaagtgtcactgagtg 3928
Query: 883 accaattggatcaagctgg 901
|| |||| |||||||||||
Sbjct: 3927 acaaatttgatcaagctgg 3909
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6820
Number of Sequences: 1807
Number of extensions: 6820
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)