BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG06FM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1730 1140 0.0
>3x_Contig1730
Length = 17223
Score = 1140 bits (575), Expect = 0.0
Identities = 710/746 (95%), Gaps = 7/746 (0%)
Strand = Plus / Plus
Query: 88 ttgtgctcgcgagaccctgaatacagagagaacattggttcttgcaacaacgtattcttc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1541 ttgtgctcgcgagaccctgaatacagagagaacattggttcttgcaacaacgtattcttc 1600
Query: 148 cctttccgctgacgtaaaattcccatgtaagcatttattaaccacagtgggttgcaatat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1601 cctttccgctgacgtaaaattcccatgtaagcatttattaaccacagtgggttgcaatat 1660
Query: 208 ctcgtcaaaaacgttcatttattatctatccccgatatttaaacgtttcagattcaggtg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1661 ctcgtcaaaaacgttcatttattatctatccccgatatttaaacgtttcagattcaggtg 1720
Query: 268 tgactgaagagtgctagtatgcccacctacgctcgtctgtttccagtgttcttagtaatg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1721 tgactgaagagtgctagtatgcccacctacgctcgtctgtttccagtgttcttagtaatg 1780
Query: 328 atagttacctatattttgaagaaccggtgaatatttaaaaattcacagaaactgaaagta 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1781 atagttacctatattttgaagaaccggtgaatatttaaaaattcacagaaactgaaagta 1840
Query: 388 aatgtttcgatgacatctgcagaccatttgaaaagatgaataactgcatctgcaaaacag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1841 aatgtttcgatgacatctgcagaccatttgaaaagatgaataactgcatctgcaaaacag 1900
Query: 448 atataaacatagtgtactgtctgtgagcagcagctattagtcaatctggcctgaaatttc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1901 atataaacatagtgtactgtctgtgagcagcagctattagtcaatctggcctgaaatttc 1960
Query: 508 tgtaaccaaaggtttctacggaccgcgagaagaagaacgttttccatc-agttcagatgg 566
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 1961 tgtaaccaaaggtttctacggaccgcgagaagaagaacgttttccaacaagttcagatgg 2020
Query: 567 taaagcagttcgtcatagtcatataattgggatcttcatcactagttgatgaagagacca 626
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2021 taaagcagttcgtcatagtcataaaattgggatcttcatcactagttgatgaagagacca 2080
Query: 627 aag-accaanactttctatcatgtcattgatttgtggagactgtggtaaagttacgcata 685
||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 2081 aagaaccaaaactttctatcatgtcattga-ttgtggagactgtggtaaagttacgcaga 2139
Query: 686 taaagacac-aagttatcattgtatctattggaagttttcccggcgggttgtaaacgatt 744
| ||||| |||||||||||||||||| |||| || | ||| ||| ||| |||||||
Sbjct: 2140 agaggacacaaagttatcattgtatctagtggaggtatcgccgtcggattgaaaacgatg 2199
Query: 745 gatttgatggaagggccaaa-aacctttcc-aggggcaagccatcgcatct-ttggccaa 801
|| ||| || | ||||||| || || ||| ||| |||||| |||||| || | ||||||
Sbjct: 2200 aatatgaagggaaggccaaagaaactatccaaggtgcaagcaatcgcagctgtgggccaa 2259
Query: 802 ggcagattatttgggaggggggattc 827
||||||||| |||||||| |||||||
Sbjct: 2260 ggcagattaattgggaggtgggattc 2285
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6352
Number of Sequences: 1807
Number of extensions: 6352
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)