BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZG06RM1.SCF screened BAC_end
         (905 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1433                                                        1283   0.0  

>3x_Contig1433 
          Length = 8270

 Score = 1283 bits (647), Expect = 0.0
 Identities = 806/848 (95%), Gaps = 11/848 (1%)
 Strand = Plus / Plus

                                                                        
Query: 47   tacagtccatttacatggacgattttacagacttaactaaacgacattcatcttgggata 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2372 tacagtccatttacatggacgattttacagacttaactaaacgacattcatcttgggata 2431

                                                                        
Query: 107  aacatccacagatcatatttgagataggtttaaggtctcaagaatctgatcctgctgaat 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2432 aacatccacagatcatatttgagataggtttaaggtctcaagaatctgatcctgctgaat 2491

                                                                        
Query: 167  gctcattgaatttgcatgtagttctcccgtctacttatcctcatgcagctcctcagatta 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2492 gctcattgaatttgcatgtagttctcccgtctacttatcctcatgcagctcctcagatta 2551

                                                                        
Query: 227  cattcaagaatgtaataaatgtgccagatggccaactgaataagctcaggcaggaaatca 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2552 cattcaagaatgtaataaatgtgccagatggccaactgaataagctcaggcaggaaatca 2611

                                                                        
Query: 287  aagaaatacatcaaagatctaaagggcaagaaatcatatatgaaatcattattgcaacgc 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2612 aagaaatacatcaaagatctaaagggcaagaaatcatatatgaaatcattattgcaacgc 2671

                                                                        
Query: 347  aagatgtcctataagattcgcagaaacatgtggtaactgattctttataggatcagaggc 406
            ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2672 aagatgtcctagaagattcgcagaaacatgtggtaactgattctttagaggatcagaggc 2731

                                                                        
Query: 407  tgcagcggatcagagatgaagaggctcgaatgaaactcgaagaagagcaaagacaaaaaa 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2732 tgcagcggatcagagatgaagaggctcgaatgaaactcgaagaagagcaaagacaaaaaa 2791

                                                                        
Query: 467  tgattgaaaaacagaagatgcaggaacagaaattgattgacgaagtgttccaaaaagaac 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2792 tgattgaaaaacagaagatgcaggaacagaaattgattgacgaagtgttccaaaaagaac 2851

                                                                        
Query: 527  tagctaagagaatggatgatgaagtgctcgaattcagtaacgataaggagattgatttat 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2852 tagctaagagaatggatgatgaagtgctcgaattcagtaacgataaggagattgatttat 2911

                                                                        
Query: 587  tgccgcctgccgaattgacctcttcggagcaggcgttcgttttttcacatctcatcacag 646
            ||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||
Sbjct: 2912 tgccgcctgccgaattgacctcttcggggcaggcgttcgtttttccacaactcatcacag 2971

                                                                        
Query: 647  canagctacctaaatactcgcagtataaattcagagctgntatacaacctcnanttcatt 706
            || ||||||||||  |||||||||||||||||||||||| ||||||||||| |     | 
Sbjct: 2972 caaagctacctaataactcgcagtataaattcagagctgttatacaacctcaatcaatta 3031

                                                                        
Query: 707  atttatgttgacgatcccgctatctttcgcatccaanatgctngntnaatccatttattt 766
            ||||||| ||||||| |||||||||||||||||| | ||||| | | || ||||||| ||
Sbjct: 3032 atttatg-tgacgat-ccgctatctttcgcatcccagatgcttgttaaa-ccattta-tt 3087

                                                                        
Query: 767  ccgnctgaatcaccactatattatngttttgaaattcttcgggatcaacttgacagccat 826
            ||| ||||||||||||||||| || ||||||||| ||||| ||||||||||||||| |||
Sbjct: 3088 ccggctgaatcaccactatataat-gttttgaaa-tcttc-ggatcaacttgacag-cat 3143

                                                                        
Query: 827  tcattactttttgnaacgaagttgatatttggacaatccatacttncattcaggcaatgg 886
            ||| ||| |||||  | |||| ||||| |||||||||||||||||  || || |||||||
Sbjct: 3144 tcaataccttttgaca-gaag-tgata-ttggacaatccatacttcaatacaagcaatgg 3200

                    
Query: 887  taaaaagg 894
            ||||||||
Sbjct: 3201 taaaaagg 3208


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6150
Number of Sequences: 1807
Number of extensions: 6150
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)