BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG07FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1714 1217 0.0
>3x_Contig1714
Length = 18873
Score = 1217 bits (614), Expect = 0.0
Identities = 691/713 (96%), Gaps = 3/713 (0%)
Strand = Plus / Plus
Query: 89 ccaaacatttaagagaagctggttccatgttgggtagattcgctctacaaaagcccggga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5215 ccaaacatttaagagaagctggttccatgttgggtagattcgctctacaaaagcccggga 5274
Query: 149 cctctttcgaggatgccaactctgctgaatggatgtcttacttcgaaactccagaatggg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5275 cctctttcgaggatgccaactctgctgaatggatgtcttacttcgaaactccagaatggg 5334
Query: 209 ttgatccaaatgttgataatttagtggcaaaggtttccctaaaggctcctaagcttttcg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5335 ttgatccaaatgttgataatttagtggcaaaggtttccctaaaggctcctaagcttttcg 5394
Query: 269 ttccaaaccacccagacatcgatcttgttcaaggtcctgacggaaaaactttacgaattg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5395 ttccaaaccacccagacatcgatcttgttcaaggtcctgacggaaaaactttacgaattg 5454
Query: 329 ttgccgttgatgtgggtatgaagtacaaccaaatccgttgtttcgtcaagcgtggtgttg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5455 ttgccgttgatgtgggtatgaagtacaaccaaatccgttgtttcgtcaagcgtggtgttg 5514
Query: 389 aattgttggttgttccatgggattacgacttcaccaccgaagaatatgacggtttgttca 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5515 aattgttggttgttccatgggattacgacttcaccaccgaagaatatgacggtttgttca 5574
Query: 449 tctctaatggtcctggtaatccagccattctgcaggaagtgtccgatagattgactaaag 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5575 tctctaatggtcctggtaatccagccattctgcaggaagtgtccgatagattgactaaag 5634
Query: 509 ttttagatgcgaagaagaccccagtcttcggtatctgtttgggtcatcaattactagctc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5635 ttttagatgcgaagaagaccccagtcttcggtatctgtttgggtcatcaattactagctc 5694
Query: 569 gtgcttctgttgcctcaacttttgagatgaagttccgtaacagaagtcacaatatttcat 628
||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct: 5695 gtgcttctggtgcctcaactttgaagatgaagttcggtaacagaggtcacaatattccat 5754
Query: 629 gtacttcgactgtctctggtagatgttatatcacttctcaaaacc-tggtttcgctgtaa 687
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5755 gtacttcgactgtctctggtagatgttatatcacttctcaaaaccatggtttcgctgtag 5814
Query: 688 atgaaactagtttgacccaatgcctggaaat-attgttaaccaccgctaaacaagggtcc 746
||||||||||||||| |||||| |||||||| |||||| |||| |||||| | || |||
Sbjct: 5815 atgaaactagtttga-ccaatggctggaaatcattgttcaccaacgctaacgatggttcc 5873
Query: 747 aatgaagggatttatacctcaaagntgccttacttttccgttcaattccatcc 799
||||||||||||||| |||| || |||||||||| |||||||||||||||||
Sbjct: 5874 aatgaagggatttatcactcagagttgccttacttctccgttcaattccatcc 5926
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5537
Number of Sequences: 1807
Number of extensions: 5537
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)