BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG07RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig411 1520 0.0
>3x_Contig411
Length = 1533
Score = 1520 bits (767), Expect = 0.0
Identities = 857/876 (97%), Gaps = 9/876 (1%)
Strand = Plus / Minus
Query: 46 gcttctcaagaaggtcgatttctacgaatggaaacaggaccagaaccacagagatacgca 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1440 gcttctcaagaaggtcgatttctacgaatggaaacaggaccagaaccacagagatacgca 1381
Query: 106 ggtgatgcgtacgtaccatatccagaaccgtgaggattatcataaatataacagaatatg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 ggtgatgcgtacgtaccatatccagaaccgtgaggattatcataaatataacagaatatg 1321
Query: 166 tggtgatgtgcgtcgtttggcacataagctatcgcttttacaacctacagatcccttccg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 tggtgatgtgcgtcgtttggcacataagctatcgcttttacaacctacagatcccttccg 1261
Query: 226 tatcaagcacgagcagctcttgctagagaaactatatcatatgggcattctttcaacaaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 tatcaagcacgagcagctcttgctagagaaactatatcatatgggcattctttcaacaaa 1201
Query: 286 atccaagatatcagcactagagaataaagttacagtctcggctttctgtcgtcgtagatt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 atccaagatatcagcactagagaataaagttacagtctcggctttctgtcgtcgtagatt 1141
Query: 346 gcctgtaataatgcatagattaaagatggcnacagacactcaaggatgccgttcaattca 405
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1140 gcctgtaataatgcatagattaaagatggc-acagacactcaaggatgccgttcaattca 1082
Query: 406 ttgaacaaggtcatgttagagtaggacctaacttgattacagatccagcatatttggtaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ttgaacaaggtcatgttagagtaggacctaacttgattacagatccagcatatttggtaa 1022
Query: 466 caaggaatttggaggattacgttacatggacagattcatccaagatcaagaagactgtac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 caaggaatttggaggattacgttacatggacagattcatccaagatcaagaagactgtac 962
Query: 526 tacgttatagaaacgcggtcgatgattttgacgatgcctagattgatcctgctatacttg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tacgttatagaaacgcggtcgatgattttgacgatgcctagattgatcctgctatacttg 902
Query: 586 ccttcggaagtaggaaaaagggcaaaaactattattttacaaatttgaaaggaaagtaag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ccttcggaagtaggaaaaagggcaaaaactattattttacaaatttgaaaggaaagtaag 842
Query: 646 tagtagtggtatatatgtatcataagaaaaagtattctaattacaatcttttgcttcgag 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tagtagtggtatatatgtatcataagaaaaagtattctaattacaatcttttgcttcgag 782
Query: 706 ctcggntccaatgtatatggatatgccggataatgcatataaacacgtaaaggattgtat 765
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 781 ctcggttccaatgtatatggatatgccggataatgcatataaacacgt-aaggattgta- 724
Query: 766 ttcaac-agactncaaaagaggtct-aaaaaacagaatggttaaaacaaggg-aataatg 822
|||||| ||||| |||||||||||| ||||||||||||||| ||| ||||| |||||||
Sbjct: 723 ttcaacaagactccaaaagaggtctaaaaaaacagaatggtaaaacaaagggaaataatg 664
Query: 823 ctccctttacatgacattgtaattgtgtgatgaagcccactgcntt-cttagatcttctt 881
||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 663 ctccctttacatgacattgtaattgtgtgatgagcccaactgctttgcttagatcttctt 604
Query: 882 gcgat-cggattgcggta-aatagtccccatgcttg 915
||||| |||| ||||||| |||||||||||||||||
Sbjct: 603 gcgatccggagtgcggtagaatagtccccatgcttg 568
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6148
Number of Sequences: 1807
Number of extensions: 6148
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)