BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG08FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1033 0.0
>3x_Contig1698
Length = 21001
Score = 1033 bits (521), Expect = 0.0
Identities = 632/661 (95%), Gaps = 6/661 (0%)
Strand = Plus / Minus
Query: 89 ttcattctgtcaaccgatattgtttatatcttttgtaaaaatagtacataatttgcataa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16082 ttcattctgtcaaccgatattgtttatatcttttgtaaaaatagtacataatttgcataa 16023
Query: 149 taagcaacaataaacgctaatatctatccttgagtgaccttattgttacatgtatcatat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16022 taagcaacaataaacgctaatatctatccttgagtgaccttattgttacatgtatcatat 15963
Query: 209 cccagctatctaaagcagcatatataagactatggattgtcttacaagcaggtgagggaa 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15962 cccagctatctaaagcagcatatataagactatggattgtcttacaagcaggtgagggaa 15903
Query: 269 tatgcaaggtgataagttactattaattaattatgtcacgtgaaaatcgcatgacgcccc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15902 tatgcaaggtgataagttactattaattaattatgtcacgtgaaaatcgcatgacgcccc 15843
Query: 329 gtcatatttggaaaatttgtttcttttagcgtagaatggaagaaaaaaatgttgatcaag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15842 gtcatatttggaaaatttgtttcttttagcgtagaatggaagaaaaaaatgttgatcaag 15783
Query: 389 ctcatcgcatcgattgggcatatacaatcatcactttgttttactaaaatctatgtaaga 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15782 ctcatcgcatcgattgggcatatacaatcatcactttgttttactaaaatctatgtaaga 15723
Query: 449 cagtagcattggttcattttaaaacttcaagaaagtgtgctggtttatttgaatatatat 508
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 15722 cagtagcattggttcattttaaaacttcaagaaagtgtgctggtttattgtaatatatat 15663
Query: 509 aagccggtaatatctagcgttttttgaacagaaactacatttgggtttgcgctatgaata 568
|||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 15662 aagccgttaatatctagcgttttttgaacagaaactaca-ttgtgtttgcgctatgaata 15604
Query: 569 acgacgacnggttccatgtttagggacaggataagggatatggtaacagaacctttcaag 628
|||||||| || |||||| |||||||| || || ||| |||| ||||||||||| ||||
Sbjct: 15603 acgacgac-ggctccatg-ttagggaccagaaaaaggaaatggaaacagaaccttccaag 15546
Query: 629 tgttagttatgtgagcagtggttaatttgatgacccgcaaattcttatcaacgg-attgg 687
||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||| ||||
Sbjct: 15545 tgttagtaatgtgagcagtggtttatttgatgacctgcagattcttatcaacggtattga 15486
Query: 688 attactcatggttgatgtttccaat-attaccggcccgtagctgaattttt-caaaaggg 745
||||||| ||||||||||||||| ||||||| || |||||||| ||||| ||||||||
Sbjct: 15485 tttactcaatgttgatgtttccaataattaccgccctgtagctgagtttttccaaaaggg 15426
Query: 746 a 746
|
Sbjct: 15425 a 15425
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7018
Number of Sequences: 1807
Number of extensions: 7018
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)