BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG08RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig590 981 0.0
>3x_Contig590
Length = 2287
Score = 981 bits (495), Expect = 0.0
Identities = 559/575 (97%), Gaps = 4/575 (0%)
Strand = Plus / Minus
Query: 44 ctttctgca-caacagttctttctcagcacttaagtccaacttatctaataatctccctg 102
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1338 ctttctgcaacaacagttcttcctcagcacttaagtccaacttatctaataatctccctg 1279
Query: 103 tcgtctgaattgaatcaaaacttatcacagatacgttctcatgctgcagccccattaggt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1278 tcgtctgaattgaatcaaaacttatcacagatacgttctcatgctgcagccccattaggt 1219
Query: 163 cagatcgggtgcctgtccgcttctgaagaccatccaacggggaaaaatgttcattgttca 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 1218 cagatcgggtgcctgtccgcttctgaagaccatccaacggggaaaaatgttcaatgctca 1159
Query: 223 tcgtcttttcttggtctaacttccgctaaatcaccgactctaatgtttatccatcaattg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1158 tcgtcttttcttggtctaacttccgctaaatcaccgactctaatgtttatccatcaattg 1099
Query: 283 acacgttatgggacactaaaggaagaactttcctagttagttagagctaaaacctagatt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 acacgttatgggacactaaaggaagaactttcctagttagttagagctaaaacctagatt 1039
Query: 343 tattcctttcttgatgcctctctatgattaatttgtttgtttctgttttgtttttttttt 402
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1038 tattcctttcttgatgcctctctatgatt-atttgtttgtttctgttttgtttttttttt 980
Query: 403 caacgttttcatgacagccgtttgtaaatgtggaatgcacaagataacctgaacaaatga 462
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 979 caacgttttcatgacagccgtttgtaaatgtggaatgcacaagataactgaaacaaatga 920
Query: 463 tgtcatttgagtaaagatttgaaagacgcgtgtttatccgggagatactactactttggt 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 919 tgtcatttgagtaaagatttgaaagacgcgtgtttatccgggagatactactac-ttgtt 861
Query: 523 cggggatgaatgtatttgatagaacatggtttcaatggtaatcattatgaatgctaaaag 582
|| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
Sbjct: 860 cgtggatgaatgtatttgatagaacatggtatcaatgttaatcattatgaatgctaaatg 801
Query: 583 ctaaagaacgtttattttggtttgtagaaaaaaaa 617
||||||||||||||| || ||||||||||||||||
Sbjct: 800 ctaaagaacgtttatatt-gtttgtagaaaaaaaa 767
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,401
Number of Sequences: 1807
Number of extensions: 10401
Number of successful extensions: 107
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)