BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZG09RM1.SCF screened BAC_end
         (907 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1009                                                        1269   0.0  

>3x_Contig1009 
          Length = 4650

 Score = 1269 bits (640), Expect = 0.0
 Identities = 740/765 (96%), Gaps = 8/765 (1%)
 Strand = Plus / Minus

                                                                        
Query: 41   gcttgtctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtt 100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1605 gcttgtctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtt 1546

                                                                        
Query: 101  tgagttttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaat 160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1545 tgagttttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaat 1486

                                                                        
Query: 161  ataaaatatactctatcacaagaaccgaatcttcaactattcacatttcatactttttat 220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1485 ataaaatatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttat 1426

                                                                        
Query: 221  atataaaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatat 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1425 atataaaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatat 1366

                                                                        
Query: 281  taatctcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaaga 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 taatctcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaaga 1306

                                                                        
Query: 341  taacgaggtaactgtcagaaagttcagtctgagacagctgttctaacctgatttccagtt 400
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1305 taacgaggtaactgtcagaaag-tcagtctgagacagctgttctaacctgatttccagtt 1247

                                                                        
Query: 401  ttaaggtacattacagtacaatgcagatactcagctaggcgaattttttttattttgaga 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 ttaaggtacattacagtacaatgcagatactcagctaggcgaattttttttattttgaga 1187

                                                                        
Query: 461  attttttgttggctttttcttttgcatcttanaaacgtgtgtaggactgagagttttgtg 520
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1186 attttttgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtg 1127

                                                                        
Query: 521  cgatatcttgagtgtgtggactgagaaacggtgaaatanatgtggtctgactaagtgtca 580
            ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1126 cgaaatcttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtca 1067

                                                                        
Query: 581  ttgtgaacgacgccgacacatagggctgtgccgggggcctgtacccttttccacacagta 640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 ttgtgaacgacgccgacacatagggctgtgccgggggcctgtacccttttccacacagta 1007

                                                                        
Query: 641  gtaataataat-aacattagcttcggtgatgtttaacggcataaactgtaaactattggt 699
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gtaataataataaacattagcttcggtgatgtttaacggcataaactgtaaactattggt 947

                                                                        
Query: 700  atgccggttcgttagttatggcctttttgccaccccgtaaactgggaaaggacctaaatg 759
            |||||||| || ||  ||  || |||||| || | ||||||||||| ||||| |||||| 
Sbjct: 946  atgccggtccg-tatgtagtgcatttttg-caacacgtaaactggg-aaggagctaaatt 890

                                                         
Query: 760  gattttttaaaattggatttccaaaatttaagggtggcggtttac 804
            |||||||||||  | ||||||  |||||||||||| |||||||||
Sbjct: 889  gattttttaaa--ttgatttctcaaatttaagggt-gcggtttac 848


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7536
Number of Sequences: 1807
Number of extensions: 7536
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)