BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC42ZG09RM1.SCF screened BAC_end (907 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1009 1269 0.0 >3x_Contig1009 Length = 4650 Score = 1269 bits (640), Expect = 0.0 Identities = 740/765 (96%), Gaps = 8/765 (1%) Strand = Plus / Minus Query: 41 gcttgtctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtt 100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1605 gcttgtctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtt 1546 Query: 101 tgagttttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaat 160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1545 tgagttttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaat 1486 Query: 161 ataaaatatactctatcacaagaaccgaatcttcaactattcacatttcatactttttat 220 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1485 ataaaatatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttat 1426 Query: 221 atataaaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatat 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1425 atataaaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatat 1366 Query: 281 taatctcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaaga 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1365 taatctcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaaga 1306 Query: 341 taacgaggtaactgtcagaaagttcagtctgagacagctgttctaacctgatttccagtt 400 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1305 taacgaggtaactgtcagaaag-tcagtctgagacagctgttctaacctgatttccagtt 1247 Query: 401 ttaaggtacattacagtacaatgcagatactcagctaggcgaattttttttattttgaga 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1246 ttaaggtacattacagtacaatgcagatactcagctaggcgaattttttttattttgaga 1187 Query: 461 attttttgttggctttttcttttgcatcttanaaacgtgtgtaggactgagagttttgtg 520 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1186 attttttgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtg 1127 Query: 521 cgatatcttgagtgtgtggactgagaaacggtgaaatanatgtggtctgactaagtgtca 580 ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1126 cgaaatcttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtca 1067 Query: 581 ttgtgaacgacgccgacacatagggctgtgccgggggcctgtacccttttccacacagta 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1066 ttgtgaacgacgccgacacatagggctgtgccgggggcctgtacccttttccacacagta 1007 Query: 641 gtaataataat-aacattagcttcggtgatgtttaacggcataaactgtaaactattggt 699 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1006 gtaataataataaacattagcttcggtgatgtttaacggcataaactgtaaactattggt 947 Query: 700 atgccggttcgttagttatggcctttttgccaccccgtaaactgggaaaggacctaaatg 759 |||||||| || || || || |||||| || | ||||||||||| ||||| |||||| Sbjct: 946 atgccggtccg-tatgtagtgcatttttg-caacacgtaaactggg-aaggagctaaatt 890 Query: 760 gattttttaaaattggatttccaaaatttaagggtggcggtttac 804 ||||||||||| | |||||| |||||||||||| ||||||||| Sbjct: 889 gattttttaaa--ttgatttctcaaatttaagggt-gcggtttac 848 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7536 Number of Sequences: 1807 Number of extensions: 7536 Number of successful extensions: 57 Number of sequences better than 1.0e-20: 1 length of query: 907 length of database: 10,358,551 effective HSP length: 16 effective length of query: 891 effective length of database: 10,329,639 effective search space: 9203708349 effective search space used: 9203708349 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)