BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG10FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1017 0.0
>3x_Contig1780
Length = 27883
Score = 1017 bits (513), Expect = 0.0
Identities = 632/665 (95%), Gaps = 5/665 (0%)
Strand = Plus / Plus
Query: 86 tgtaaagtaggtaatgaaggaattttttgctttttgtccgtgtatttagatgccaaccat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22760 tgtaaagtaggtaatgaaggaattttttgctttttgtccgtgtatttagatgccaaccat 22819
Query: 146 agagaacataaacctaaaagttggtaagtagaagacttgacgatgattttagaacaatat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22820 agagaacataaacctaaaagttggtaagtagaagacttgacgatgattttagaacaatat 22879
Query: 206 ctatcgataatattaaaacataggaaaagagttggtgttgaaagtttcaatctgatgtga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22880 ctatcgataatattaaaacataggaaaagagttggtgttgaaagtttcaatctgatgtga 22939
Query: 266 cagcacatgatgaaatcaaaaatcaaggatctcatttgaaaattgatttcaggttgggac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22940 cagcacatgatgaaatcaaaaatcaaggatctcatttgaaaattgatttcaggttgggac 22999
Query: 326 ttaaaacatttcatagaaactgttgtgctggattcattttcaaccaatctagagaagatt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23000 ttaaaacatttcatagaaactgttgtgctggattcattttcaaccaatctagagaagatt 23059
Query: 386 gtggatgcattttcattaatcgtagctttgtgagatttcaattccatctcaatcaaattt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23060 gtggatgcattttcattaatcgtagctttgtgagatttcaattccatctcaatcaaattt 23119
Query: 446 ggattagaagctttctcattccaaatcgaccttctttatgc-attcatatagtttggatc 504
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||
Sbjct: 23120 ggattagaagctttctcattccaaatcgaccttc-ttatgcaattcatatagtttgaatc 23178
Query: 505 taccatggtcagatttgacatcatgtttaaat-aaaatagattggatttggttaaagtga 563
|||||||||||||||||||||||||| ||||| ||||||||||| |||| ||| ||||||
Sbjct: 23179 taccatggtcagatttgacatcatgtataaataaaaatagattgtattt-gtttaagtga 23237
Query: 564 actttattttgaacaaagagaatattcaaggagtttttggagaagggcagattattcttt 623
||||||||||||||||||||||||| |||||| | ||| |||||||||||| ||||| |
Sbjct: 23238 actttattttgaacaaagagaatatcaaaggag-tattgtagaagggcagataattctat 23296
Query: 624 tttacaactaaaggcccaatgttttgagaatggaggggagattagagaataccatttaaa 683
|| |||||||||| | |||||| |||||||| ||||| |||| |||||| || | | |||
Sbjct: 23297 ttcacaactaaagccacaatgtattgagaattgagggaagataagagaaaacgaataaaa 23356
Query: 684 aatggggacagaccagctgattgacttaaacgttacaaaacgtttaaccggttaagtgta 743
||| |||||||||||||||| ||||| |||||| |||||||||||| ||| | |||||||
Sbjct: 23357 aattgggacagaccagctgaatgactcaaacgtaacaaaacgtttagccgttaaagtgta 23416
Query: 744 atgta 748
|||||
Sbjct: 23417 atgta 23421
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9613
Number of Sequences: 1807
Number of extensions: 9613
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)