BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG10RM1.SCF screened BAC_end
(860 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1409 823 0.0
>3x_Contig1409
Length = 9404
Score = 823 bits (415), Expect = 0.0
Identities = 520/543 (95%), Gaps = 9/543 (1%)
Strand = Plus / Plus
Query: 47 tataaatccaagaccgtatgtatagttcgctatagagaaaatacgatttgatggacttag 106
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4981 tataaatccaagaccgtaagtatagttcgctatagagaaaatacgatttgatggacttag 5040
Query: 107 ttgcaatgtctctttcaacactttacattgatttaataacagcgaatggttcataacaat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5041 ttgcaatgtctctttcaacactttacattgatttaataacagcgaatggttcataacaat 5100
Query: 167 atgtaaatctttgaaagaatcgcgatctttgtttatccatattaaacatggttcttccgg 226
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5101 atgtaaatctttgaaagaatcgcgatctttgtttatccatattaaacatggatcttccgg 5160
Query: 227 ttttgacgctggtccaaatttattggtgatggcagac-ttgaattgtgataaactcaaat 285
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5161 ttttgacgctggtccaaatttattggtgatggcagactttgaattgtgataaactcaaat 5220
Query: 286 tgtttttcaattttactttacttgtaatagtggtcttgggaattctgtatttgaaaggct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5221 tgtttttcaattttactttacttgtaatagtggtcttgggaattctgtatttgaaaggct 5280
Query: 346 ttagcgcttgtgatattcttgtattctgttctaaagtggcatgtactttgtgatcgacaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5281 ttagcgcttgtgatattcttgtattctgttctaaagtggcatgtactttgtgatcgacaa 5340
Query: 406 atattcttttgacgttgtatgattcgatgatgttaagaaaagatgagactttctgttcaa 465
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 5341 atattcttttgacgttgtatgattcgatgatgttaagaaagaatgagacttcttgttcaa 5400
Query: 466 tatcagactctgataaaattggaagccgg-ttaccatggaattgcaaataa-gcccgtta 523
||||||||||||||||||| |||||| || | || ||| |||||||||||| || |||||
Sbjct: 5401 tatcagactctgataaaataggaagcgggataacaatgaaattgcaaataaggcacgtta 5460
Query: 524 -tacaattagc-acgtatt-aacagaagttct-gcacaatattattactcgatcgccctt 579
||||| |||| ||||||| ||||| |||||| ||||| ||||||||||||||||||||
Sbjct: 5461 ttacaa-tagcaacgtattcaacag-agttctggcacataattattactcgatcgccctt 5518
Query: 580 ttt 582
|||
Sbjct: 5519 ttt 5521
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7152
Number of Sequences: 1807
Number of extensions: 7152
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 860
length of database: 10,358,551
effective HSP length: 16
effective length of query: 844
effective length of database: 10,329,639
effective search space: 8718215316
effective search space used: 8718215316
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)