BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZG11FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1132 0.0
>3x_Contig1517
Length = 8289
Score = 1132 bits (571), Expect = 0.0
Identities = 685/715 (95%), Gaps = 6/715 (0%)
Strand = Plus / Minus
Query: 89 tgaactggaggttcaaaaacaattcttttcgaggatttgttatcaagagatatatcatcg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6448 tgaactggaggttcaaaaacaattcttttcgaggatttgttatcaagagatatatcatcg 6389
Query: 149 aaggaagtatctcatcagcgttattttgatcaagagccaatagcttatcatgcaatacta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6388 aaggaagtatctcatcagcgttattttgatcaagagccaatagcttatcatgcaatacta 6329
Query: 209 ttaggcaatgtaccttgtcgcaaggggatacattctcatgtaacatcttatcaaataata 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6328 ttaggcaatgtaccttgtcgcaaggggatacattctcatgtaacatcttatcaaataata 6269
Query: 269 accctaccatatcaagtctttctttatgtttcaactctaacgctaaaaatgctggtaaat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6268 accctaccatatcaagtctttctttatgtttcaactctaacgctaaaaatgctggtaaat 6209
Query: 329 caagtattcgcgaactgcttaactctttcatcgtgttcaatttagtattcaacatcttat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6208 caagtattcgcgaactgcttaactctttcatcgtgttcaatttagtattcaacatcttat 6149
Query: 389 caaactcaataaactccggattattacgaaataggcttgtcattttccattcattcgaac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6148 caaactcaataaactccggattattacgaaataggcttgtcattttccattcattcgaac 6089
Query: 449 tagtcgatttcgcctgtcttgttggatgatttgggacacaagtgccaacttgcagtattt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6088 tagtcgatttcgcctgtcttgttggatgatttgggacacaagtgccaacttgcagtattt 6029
Query: 509 tcttgaatatttcgcattcacacaaatccataatctggtccgttttgatattattagcct 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6028 tcttgaatatttcgcattcacacaaatccataatctggtccgttttgatattattagcct 5969
Query: 569 cttgcagcttaatttgatgggatatttcttttggagtcaacatttgctgataatttctg- 627
|||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||
Sbjct: 5968 cttgcagcttaatttgatgggatatttcttctggagtcaacaattgctgataa-ttctgt 5910
Query: 628 tcagaattaggtcttagtcttggtcctatgctgcttatttc-aaaactactacttctgga 686
|||||||||| ||| ||||| || |||||||| |||||| ||||||||||||||||||
Sbjct: 5909 tcagaattagttctagttcttgttcttatgctgc-tatttcgaaaactactacttctgga 5851
Query: 687 tctgttgagaattctactcaattcactatttct-ggttctctcggggtgaacataacaat 745
|||||||| || ||||||||| |||||||||| | |||||||| | ||| ||||||| |
Sbjct: 5850 tctgttgaagatactactcaatccactatttctcgtttctctcgcgttgagcataacatt 5791
Query: 746 tacactttcaggcga-gcttatgccttaaaatgttggtggcaagaactttcaaat 799
|||||| ||||||| ||| |||| ||||||||||| |||||||| || ||||||
Sbjct: 5790 cacacttccaggcgaggctaatgcattaaaatgttgttggcaagatctatcaaat 5736
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7270
Number of Sequences: 1807
Number of extensions: 7270
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)