BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZG12FM1.SCF screened BAC_end
         (925 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1791                                                        1086   0.0  

>3x_Contig1791 
          Length = 39945

 Score = 1086 bits (548), Expect = 0.0
 Identities = 626/643 (97%), Gaps = 7/643 (1%)
 Strand = Plus / Minus

                                                                         
Query: 86    caagagtttaacgtatatatcaagtctttcgttttgatatgagaccatttctattctttt 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20127 caagagtttaacgtatatatcaagtctttcgttttgatatgagaccatttctattctttt 20068

                                                                         
Query: 146   tattataccattgacatgatcgattaagtttgatctagtctttgttgataagggtaccgt 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20067 tattataccattgacatgatcgattaagtttgatctagtctttgttgataagggtaccgt 20008

                                                                         
Query: 206   gtcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacatattctgttcatg 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20007 gtcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacatattctgttcatg 19948

                                                                         
Query: 266   gttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaaatgt 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19947 gttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaaatgt 19888

                                                                         
Query: 326   attacgcagtccggcgatttctatttcacatccatcgatgctgccggagaaataaataga 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19887 attacgcagtccggcgatttctatttcacatccatcgatgctgccggagaaataaataga 19828

                                                                         
Query: 386   gtttttccaggctaatgcctctgttctattcctaaacattatatcacgtttttggctttg 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19827 gtttttccaggctaatgcctctgttctattcctaaacattatatcacgtttttggctttg 19768

                                                                         
Query: 446   attcacaatggataaaacattggggtcagtattcttgttttccgttaagaataagttgtt 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 19767 attcacaatggataaaacattggggtcagtattcttgttttccgttaagaataggttgtt 19708

                                                                         
Query: 506   acaatattccatttcgtacagcgaagaaagcggttgagataaatcaataatgtaatttga 565
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19707 acaatattccatttcgtacagcgaagaaagcggttgagataaatcaataatgtaatttga 19648

                                                                         
Query: 566   ggtctttagtta-ttcatctagttcgatctttggatccagccaggacatgctttcaaag- 623
             |||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 19647 ggtctt-agttaattcatctagttcgatctttggatccagccaggacatgctatcaaaga 19589

                                                                         
Query: 624   aaaattggaaggaagttgtcaatatcgcaaacttagttttttcaatgattctttatnaca 683
             ||||| |||||||||| ||||||||||||||||||| | || |||||||||||||  |||
Sbjct: 19588 aaaataggaaggaagtagtcaatatcgcaaacttag-tcttccaatgattctttaccaca 19530

                                                        
Query: 684   ttttcctacaaaagagaaactttcttggactgaactttcattt 726
              |||||||||| |||| |||||||||| |||| ||||||||||
Sbjct: 19529 -tttcctacaagagag-aactttcttgtactg-actttcattt 19490


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,813
Number of Sequences: 1807
Number of extensions: 15813
Number of successful extensions: 117
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)