BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH01FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1796 1376 0.0
>3x_Contig1796
Length = 24558
Score = 1376 bits (694), Expect = 0.0
Identities = 768/782 (98%), Gaps = 8/782 (1%)
Strand = Plus / Plus
Query: 88 tccacaatacacattagggaagcaaagataaaacactctaaattatatctgtgaaaaaac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19931 tccacaatacacattagggaagcaaagataaaacactctaaattatatctgtgaaaaaac 19990
Query: 148 agaatgtctgacaagcaagaacacccagtctttgggcatgaacatagacacccacatata 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19991 agaatgtctgacaagcaagaacacccagtctttgggcatgaacatagacacccacatata 20050
Query: 208 catgattctgaaagtgtagatccaaaagctcctgtagctaatccagaaaatgttgatttg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20051 catgattctgaaagtgtagatccaaaagctcctgtagctaatccagaaaatgttgatttg 20110
Query: 268 tcaaagctttccccacaagagttaaaaatatacaaaatgtatggaaaactacccagtaag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20111 tcaaagctttccccacaagagttaaaaatatacaaaatgtatggaaaactacccagtaag 20170
Query: 328 aaagacttattccaacacaaattgcaagaacgaaaatatttcgatagcggggactacgct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20171 aaagacttattccaacacaaattgcaagaacgaaaatatttcgatagcggggactacgct 20230
Query: 388 ttacgtagggcaggtgtgaaatctgacgatttgcagtcgagtccagttgctaataacaat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20231 ttacgtagggcaggtgtgaaatctgacgatttgcagtcgagtccagttgctaataacaat 20290
Query: 448 ttacctttgacaaatcctagcggattaagagaaagtatcatcaaaagaagaatgtccagt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20291 ttacctttgacaaatcctagcggattaagagaaagtatcatcaaaagaagaatgtccagt 20350
Query: 508 agtgcaaacggtcccagcaatgtcgacgcccaaaggctaaatagacaaggcagtatatca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20351 agtgcaaacggtcccagcaatgtcgacgcccaaaggctaaatagacaaggcagtatatca 20410
Query: 568 agtggtccaccaccaccaaggtcacccaataaatagtagttgttctattattaaactcga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20411 agtggtccaccaccaccaaggtcacccaataaatagtagttgttctattattaaactcga 20470
Query: 628 gaatcacatcaataggaaagtctcggaacagatgtcaacattcccgtaagtctcatgcac 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20471 gaatcacatcaataggaaagtctcggaacagatgtcaacattcccgtaagtctcatgcac 20530
Query: 688 atcgtatggttttctctattgtcgccccggtttatttgatcttacccatac-tgaattac 746
||||||||| |||||||| |||||||||| |||||||||||||| |||||| ||||||||
Sbjct: 20531 atcgtatgg-tttctcta-tgtcgccccgttttatttgatctta-ccatacttgaattac 20587
Query: 747 aaagggtttatataaattaaatatcaactgttgtaacgcttttat-taatggaaacttta 805
||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 20588 aaatggtttatataaattagatatcaactgttgtaacgcttttatataatggaaacttta 20647
Query: 806 acgttttg-aaattacggac-attacttgtataggatta-tattattaactttaggaaag 862
||| |||| |||| |||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct: 20648 acgctttgcaaataacggacaattacttgtataggattagtattataaactttaggaaag 20707
Query: 863 aa 864
||
Sbjct: 20708 aa 20709
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7421
Number of Sequences: 1807
Number of extensions: 7421
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)