BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH01RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1115 624 e-179
>3x_Contig1115
Length = 4702
Score = 624 bits (315), Expect = e-179
Identities = 362/374 (96%), Gaps = 3/374 (0%)
Strand = Plus / Minus
Query: 386 tatcagaacaaataataggaacgacatccaaagttttgattagctttattgtttcatgtt 445
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4702 tatcagancaaataataggaacgacatccaaagttttgataagctttattgtttcatgtt 4643
Query: 446 ctcttggccaatctaagtctttatcgtactccgaactgtcgacagttctattcaagaagt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4642 ctcttggccaatctaagtctttatcgtactccgaactgtcgacagttctattcaagaagt 4583
Query: 506 aatgtagagtttcattaatagatttgctcttctttgcagtgccaggctgtattttgactt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4582 aatgtagagtttcattaatagatttgctcttctttgcagtgccaggctgtattttgactt 4523
Query: 566 tatacttatttttagttaaagcagccccaggggcatagacaggggatacgtcagctattt 625
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 4522 tatacttatttttagttaaagcagcccagggggcatagacagggataacgtcagctattt 4463
Query: 626 tatcatctttggaaataccggttttcaattgattc-aaaattttggaatatcaacttcga 684
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4462 tatcatctttggaaataccggttttcaattgattcaaaaattttggaatatcaacttcga 4403
Query: 685 ccttttctgatttgttaaactgcaagatgcgagtttgctccttgttttttacgtattcgc 744
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||
Sbjct: 4402 ccttttctgatttgttaaactgcaagatgcgagtttgct-cttggtttttacgtatccgc 4344
Query: 745 ttttttaaactccc 758
|||||||||||||
Sbjct: 4343 -tttttaaactccc 4331
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9908
Number of Sequences: 1807
Number of extensions: 9908
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)