BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH02FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1075 1201 0.0
>3x_Contig1075
Length = 3835
Score = 1201 bits (606), Expect = 0.0
Identities = 664/678 (97%), Gaps = 4/678 (0%)
Strand = Plus / Minus
Query: 87 taatgcctaaaaaaaaagtaaaagaaaaaaaaagctgaaaactgaattgaacaaagaaca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 taatgcctaaaaaaaaagtaaaagaaaaaaaaagctgaaaactgaattgaacaaagaaca 1947
Query: 147 aaacagcgaaatagcgatggaaaccttcaataaattttaaacaatacgccaatcctatag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 aaacagcgaaatagcgatggaaaccttcaataaattttaaacaatacgccaatcctatag 1887
Query: 207 ttaccagcaccgctttacagtttggaaagagccacacatatatacaaagaatgtcttcta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1886 ttaccagcaccgctttacagtttggaaagagccacacatatatacaaagaatgtcttcta 1827
Query: 267 tctcacaaaacgatttatctaacttggatgatggttccaagaaagaaatcatgacctttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826 tctcacaaaacgatttatctaacttggatgatggttccaagaaagaaatcatgacctttt 1767
Query: 327 tagaatccgagaattccaagcaaaaagtacagatgtctattcatcagttcaccaatcttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1766 tagaatccgagaattccaagcaaaaagtacagatgtctattcatcagttcaccaatcttt 1707
Query: 387 gtttcaaaaactgtattagcaacgttcaaaatgctgatttgtcttctcaagaagaacaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1706 gtttcaaaaactgtattagcaacgttcaaaatgctgatttgtcttctcaagaagaacaat 1647
Query: 447 gcctaaacaactgtgttaacagatttttggacacaaatatcagaattgttaagggtttgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1646 gcctaaacaactgtgttaacagatttttggacacaaatatcagaattgttaagggtttgc 1587
Query: 507 aatctattcaataatttcactccgcgatgtgaaaagataatgtagcgcctgctaaacctg 566
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1586 aatctattcaataatttcactccgcgatgtgaaaagaaaatgtagcgcctgctaaacctg 1527
Query: 567 aacctgtaaagctcgttgtgtgacttcacttcttgtacatatatcagtgagccccgcccc 626
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1526 aacctgtaaagctcgttgtgtgactccacttcttgtacatatatcagtgagccccgcccc 1467
Query: 627 ttgtttcgttttaattttcggattgctaagttacagggttagtatttttcctttatgtga 686
|| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1466 -tggttcgtttt-attttcggattgctaagttacagggttagtattttt-ctttatgtga 1410
Query: 687 tggaattagattagtatttatgccaataaaatagtaagagaattacgctccttcagtttc 746
| ||||||||| |||||||||| |||||| |||||||||| ||||||||||||||||||
Sbjct: 1409 t-gaattagataggtatttatgcaaataaattagtaagagatttacgctccttcagtttc 1351
Query: 747 tttgaatcttttttgaaa 764
||||| |||| |||||||
Sbjct: 1350 tttgattcttctttgaaa 1333
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9400
Number of Sequences: 1807
Number of extensions: 9400
Number of successful extensions: 113
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)