BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH02RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 1374 0.0
>3x_Contig1777
Length = 26319
Score = 1374 bits (693), Expect = 0.0
Identities = 840/873 (96%), Gaps = 12/873 (1%)
Strand = Plus / Minus
Query: 45 gcttccataaagatgattttattgttttgaaagtatttaatccggggtcttattgttttt 104
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 12531 gcttccataaagatgattttattgatttgaaagtatttaatccggggtcttattgttttt 12472
Query: 105 acctctcttatcgtaatgaacaggaccagttggaaacaactaggaagttttattttgtgg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12471 acctctcttatcgtaatgaacaggaccagttggaaacaactaggaagttttattttgtgg 12412
Query: 165 taccaccagtcctttacttgaacgataaatttgttcccttaaattcaattgcctttctta 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 12411 taccaccagtcctttacttgaacgataaatttgttcccttaaattcaattgccttacaga 12352
Query: 225 gtgtagtttcgaaatggatggggaaagattgggacccaatatttcgcaaaatcgataaca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12351 gtgtagtttcgaaatggatggggaaagattgggacccaatatttcgcaaaatcgataaca 12292
Query: 285 agggatataacatgatccactttacacctcttcaacaaagaggagagtccgattctcctt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12291 agggatataacatgatccactttacacctcttcaacaaagaggagagtccgattctcctt 12232
Query: 345 attctatctatgaccaattgacctacgactccaacttttttaacaccgtagaggatgtga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12231 attctatctatgaccaattgacctacgactccaacttttttaacaccgtagaggatgtga 12172
Query: 405 agcaaatggtccaaaagttgcataaaactcacaacattctcgcattaacagatgtggttt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12171 agcaaatggtccaaaagttgcataaaactcacaacattctcgcattaacagatgtggttt 12112
Query: 465 acaatcatactgctaacaactctccatggttgttagagcatccagaatctggttacaatc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12111 acaatcatactgctaacaactctccatggttgttagagcatccagaatctggttacaatc 12052
Query: 525 acattactgcaccacatttactccctgctattgaa-tagat-aaagtctac-tgaattca 581
||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct: 12051 acattactgcaccacatttactccctgctattgaattagataaaagtctacttgaattca 11992
Query: 582 gtggttacatgaaggcacttggata-ccaacggatatttcatctgtagaagaatctatct 640
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 11991 gtggttacatgaaggcacttggatatccaacggatatttcatctgtagaagatcttatct 11932
Query: 641 ctattatggatggtatcaaaattcatgttttaagctctttgaaattatgggaattctatg 700
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 11931 ctattatggatggtatcaaaattcatgttttaggctctttgaaattatgggaattctatg 11872
Query: 701 cagtaaacatcgatgctttattgaaagaagttgcagatcagtggggattcgacttcattg 760
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 11871 cagtaaacatcgatgctttattgaaagaagttgcagatcagt-gggattcgactccattg 11813
Query: 761 gaagctattaacagttcctggtgattgttgaagatgacttggttaaattggggcggttnt 820
||||||| |||||||||||||||| |||||||||||||||||| ||||| || ||||| |
Sbjct: 11812 gaagcta-taacagttcctggtga-tgttgaagatgacttggtaaaatt-ggccggtt-t 11757
Query: 821 cattcgtaactcttgtactaatgatgaactttgggttctttattcacaagaatttgcaat 880
|||||||| ||||||||||||||||| ||||| |||||||||| |||||| ||||||||
Sbjct: 11756 cattcgtagctcttgtactaatgatg-acttt-ggttctttatccacaag-atttgcaaa 11700
Query: 881 tacttgaataatattccaatttattacaatttt 913
||| | ||||||| | | ||||| ||||||||
Sbjct: 11699 taccttgataatatccaagtttatcacaatttt 11667
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7782
Number of Sequences: 1807
Number of extensions: 7782
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)