BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH03FM1.SCF screened BAC_end
(986 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1064 1162 0.0
>3x_Contig1064
Length = 3765
Score = 1162 bits (586), Expect = 0.0
Identities = 671/696 (96%), Gaps = 3/696 (0%)
Strand = Plus / Plus
Query: 88 cagggaactgaggcatagcttcaccagattcatcaatgtgctcagagatagactttcttc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 cagggaactgaggcatagcttcaccagattcatcaatgtgctcagagatagactttcttc 1164
Query: 148 tagttctcctagccaatagttgtctagccatagattggcaaatgtataaagaacctaaca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 tagttctcctagccaatagttgtctagccatagattggcaaatgtataaagaacctaaca 1224
Query: 208 agttaacattaaccaatttttgagccttttcagcatcgtactcatgagcattgatgtttt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 agttaacattaaccaatttttgagccttttcagcatcgtactcatgagcattgatgtttt 1284
Query: 268 gacaaaatccagcggtatgtaccaatttttgtggtacaattcccttgtgagaacttggaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 gacaaaatccagcggtatgtaccaatttttgtggtacaattcccttgtgagaacttggaa 1344
Query: 328 tcgacttaaccaccatttctacttcatctgcgttcgatatatcacaagcccatagggaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 tcgacttaaccaccatttctacttcatctgcgttcgatatatcacaagcccatagggaaa 1404
Query: 388 tcttaactggaggtatattgttctgtttctggaagagttccaattcagttttaacattct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 tcttaactggaggtatattgttctgtttctggaagagttccaattcagttttaacattct 1464
Query: 448 ctaaactaggcaaagaaagatccatcaatgctagttctgatccctgtgacaccaatgcct 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 ctaaactaggcaaagaaagatccatcaatgctagttctgatccctgtgacaccaatgcct 1524
Query: 508 gtgacaaagtgtgagccaacccaccggcagcaccagtgacgatggttacgtgtccatcca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 gtgacaaagtgtgagccaacccaccggcagcaccagtgacgatggttacgtgtccatcca 1584
Query: 568 atctaaaagatagcagaacatcagtaattgatgggatcgttgggttcataggtgtagcag 627
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1585 atctaaaagaaggcagaacatcagtaattgatgggatcgttgggttcaaaggtgtagcag 1644
Query: 628 aacgaacttcttgagccattgtcnttt-cattttatcttgtgtttgctgtatagtggtga 686
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct: 1645 aacgaacttcttgagccattgtcttttgcattttatcttgtgtttgctgtatagtgttga 1704
Query: 687 taagatat-tttgggggtacttcaaagttt-actattcagggctttgttngcgtaccctc 744
|||||||| | ||||| |||||||||||| ||||| ||| ||| ||| |||| ||||
Sbjct: 1705 taagatatatatggggtaacttcaaagtttaactatacagtgctatgtcgtcgtaacctc 1764
Query: 745 tggcgttttttttcgccttacttttttaccaaactg 780
|| |||| || |||| ||||||| | ||| ||||||
Sbjct: 1765 tgtcgttattcttcgtcttacttatatacaaaactg 1800
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6544
Number of Sequences: 1807
Number of extensions: 6544
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 986
length of database: 10,358,551
effective HSP length: 16
effective length of query: 970
effective length of database: 10,329,639
effective search space: 10019749830
effective search space used: 10019749830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)