BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH03RM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1802 1590 0.0
>3x_Contig1802
Length = 45229
Score = 1590 bits (802), Expect = 0.0
Identities = 911/940 (96%), Gaps = 6/940 (0%)
Strand = Plus / Minus
Query: 43 cttatgttgttcccagagatatcatattatagtatttgcttagtcacgtgatttcgatgc 102
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 27118 cttatgttgttcccagagatatcaaattatagtatttgcttagtcacgtgatttcgatgc 27059
Query: 103 gtgccaacacttgactattacaaagaatagaacgtcgcagtgcacacgagaaaattagta 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27058 gtgccaacacttgactattacaaagaatagaacgtcgcagtgcacacgagaaaattagta 26999
Query: 163 ctctgatgtatcactattaataacacattgctaaaatatcacgcatgctaatgggata-c 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 26998 ctctgatgtatcactattaataacacattgctaaaatatcacgcatgctaatgggataac 26939
Query: 222 tcacaccaatcaaagcgtattccgcatatcgtatccggcgtttcttacggaaccattatt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26938 tcacaccaatcaaagcgtattccgcatatcgtatccggcgtttcttacggaaccattatt 26879
Query: 282 ctatttcaatttaactacttgcaagaacgccaaataggaacatatttgaagcattacttt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26878 ctatttcaatttaactacttgcaagaacgccaaataggaacatatttgaagcattacttt 26819
Query: 342 gtctacaccataaaactattaatggtaagattaaagtaagaataattacctcaattcagt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26818 gtctacaccataaaactattaatggtaagattaaagtaagaataattacctcaattcagt 26759
Query: 402 gtactgtaatcaattatactattcactatgaagcaaaatactgttgaccctagcaatcaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26758 gtactgtaatcaattatactattcactatgaagcaaaatactgttgaccctagcaatcaa 26699
Query: 462 tagaagccgaggttcgctattgtactttactactgtttacagtcaattcctcgttaatct 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26698 tagaagccgaggttcgctattgtactttactactgtttacagtcaattcctcgttaatct 26639
Query: 522 atctctatgaactcgtttaaccctataagccaaggtactacgttttctccctctatcctg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26638 atctctatgaactcgtttaaccctataagccaaggtactacgttttctccctctatcctg 26579
Query: 582 ttcctacttttccctcctttctctgttttccatctcaagtctaggtttcctcttcgaaaa 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26578 ttcctacttttccctcctttctctgttttccatctcaagtctaggtttcctcttcgaaaa 26519
Query: 642 ttgaaaataatccgtaataataatacattaaacatctgtctgttcacttcaactnttgta 701
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 26518 ttgaaaataatccgtaataataatacattaaacatctgtctgttcacttcaacttttgta 26459
Query: 702 aacttgtgcaatgaggaatatgtgttgaagagtctatagcggtacagtccatactgggag 761
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26458 aacttgtgcaatgaggaatatgtgttgaagagtctatagcggtacagtccatactggagt 26399
Query: 762 ttgaaacgatcagacaggccagcattcaaattaatttccaacatgaactgtgggatgata 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 26398 ttgaaacgatcagacaggccagcattcaaattaatttccaacatgaactgtgggaggata 26339
Query: 822 tancatgcgaaatttccgtccccttgt-gtgccctcaatgcctggaggtctggtcgaaat 880
|| |||||||||||||||| |||||| ||||| |||||| || |||||||| ||||||
Sbjct: 26338 tacaatgcgaaatttccgtcaccttgtggtgccttcaatggcttgaggtctgtccgaaat 26279
Query: 881 c-atgcaccaactgcagcccttcactatcggctcttgtaag-actattcggttcattata 938
| |||||| |||||||||||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 26278 caatgcacaaactgcagcccttcactatc-gctcttgttagaactatccgtttcattata 26220
Query: 939 aggaagctgaacccatacggcagaatttac-catgaatac 977
|| | ||||||| ||||| |||||| |||| |||||||||
Sbjct: 26219 agaaggctgaacacatactgcagaaattactcatgaatac 26180
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6505
Number of Sequences: 1807
Number of extensions: 6505
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)