BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH04FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1424 1219 0.0
>3x_Contig1424
Length = 9842
Score = 1219 bits (615), Expect = 0.0
Identities = 674/691 (97%), Gaps = 2/691 (0%)
Strand = Plus / Plus
Query: 88 cacattatataccgcaacattttgtcattcgtaattatgtaccagtgtgtttcttaataa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5804 cacattatataccgcaacattttgtcattcgtaattatgtaccagtgtgtttcttaataa 5863
Query: 148 tgaaatagcgtaccaaaatttccacaatggaaatcaaaacgctgatgaatatgattgtaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5864 tgaaatagcgtaccaaaatttccacaatggaaatcaaaacgctgatgaatatgattgtaa 5923
Query: 208 taaaccaccaggtgatacgggccatattccgttcagcaattgaatcgacacatatatcga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5924 taaaccaccaggtgatacgggccatattccgttcagcaattgaatcgacacatatatcga 5983
Query: 268 aaaactctaaaaatactttacaacgatcgtttaaaacttgaacacgaggatcaatttcta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5984 aaaactctaaaaatactttacaacgatcgtttaaaacttgaacacgaggatcaatttcta 6043
Query: 328 aatattctctcattgcttgatacaaagagtgcaaacttggttcaaaggaccagaaaaact 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6044 aatattctctcattgcttgatacaaagagtgcaaacttggttcaaaggaccagaaaaact 6103
Query: 388 ctggggtgtcaagtacactggatgataggttaacatcgacgcgtaacttgaatagcttac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6104 ctggggtgtcaagtacactggatgataggttaacatcgacgcgtaacttgaatagcttac 6163
Query: 448 ctgatttcttcaataattgttcccttttcaaccccaaggtaccatacaaagcaagtcttt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6164 ctgatttcttcaataattgttcccttttcaaccccaaggtaccatacaaagcaagtcttt 6223
Query: 508 taggcaatttagagactgacccgaagatcggaactatgcgcgcttcaaatctcgatagtt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6224 taggcaatttagagactgacccgaagatcggaactatgcgcgcttcaaatctcgatagtt 6283
Query: 568 tgaccgattgagctatggcatgggacattgtttaggctgttaagtgttctccggacctca 627
||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||
Sbjct: 6284 tgaccgattgagctatggcatgggacaatgttaaggctgttaagtggtctccggacctca 6343
Query: 628 aagtcactatgtcatt-aaaatacgaggtctttccgtatccatgtcatatttcaaatgga 686
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6344 aagtcactatgtcattaaaaatacgaggtctttccgtatccatgtcatattcgaaatgga 6403
Query: 687 agctttcaatttcgatttcttgttcatttaaaggtttcagcccccatgttttttttagat 746
|||||||||| ||||| |||||||||| |||||||||||| | ||||||| || | ||||
Sbjct: 6404 agctttcaatctcgatatcttgttcatctaaaggtttcag-caccatgttcttataagat 6462
Query: 747 gaaaaccagatgtcaccttagatgttttttt 777
|||||| ||||||||||| |||||||||||
Sbjct: 6463 gaaaacgagatgtcacctaggatgttttttt 6493
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,913
Number of Sequences: 1807
Number of extensions: 13913
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)