BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH04RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1531 1485 0.0
>3x_Contig1531
Length = 8774
Score = 1485 bits (749), Expect = 0.0
Identities = 864/896 (96%), Gaps = 5/896 (0%)
Strand = Plus / Minus
Query: 43 cttagaaagcagcagtctgcagatcctcctgtcgtttccaatcaggatcatgagactgct 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6464 cttagaaagcagcagtctgcagaacctcctgtcgtttccaatcaggatcatgagactgct 6405
Query: 103 atgtcacaatttgcttactctggttatggaaatcaaggaacttcgctgaccactgcttca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6404 atgtcacaatttgcttactctggttatggaaatcaaggaacttcgctgaccactgcttca 6345
Query: 163 tctgaggcgatggataccatgggttttgtatcagatgacttgaagcaactactcgctc-g 221
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 6344 tctgaggcgatggataccatgggttttgtatcagatgacttgaagcaactactttctatg 6285
Query: 222 tcagattcaaacaaaaaagagaacagctctccgcaacttaaccacaaccaacaacaacaa 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6284 acagattcaaacaaaaaagagaacagctctccgcaacttaaccacaaccaacaacaacaa 6225
Query: 282 cagccactgcctgtttcgaactcaccaagattgagcccatccggaacttaccagcaatcc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6224 cagccactgcctgtttcgaactcaccaagattgagcccatccggaacttaccagcaatcc 6165
Query: 342 cctttaccccccaaccaaggactctacggacctatgatggtccctccaccatttttaatg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6164 cctttaccccccaaccaaggactctacggacctatgatggtccctccaccatttttaatg 6105
Query: 402 agcaatgtgccaaaactaggtccacatccctacgctggtattgcaaatggtcctggtatg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6104 agcaatgtgccaaaactaggtccacatccctacgctggtattgcaaatggtcctggtatg 6045
Query: 462 ttgcctatgtatgttcctatgaatgctggtcgtccaatcaaccaacctcctgcataccct 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6044 ttgcctatgtatgttcctatgaatgctggtcgtccaatcaaccaacctcctgcataccct 5985
Query: 522 caagcaatgtacaatgcgactcaccaacaaggtattgcattcccaccgcaacaacttttt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5984 caagcaatgtacaatgcgactcaccaacaaggtattgcattcccaccgcaacaacttttt 5925
Query: 582 caacatcaacaattacattcatcacagccacaaccacaacaagtccaacaagttcagcaa 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5924 caacatcaacaattacattcatcacagccacaaccacaacaagtccaacaagttcagcaa 5865
Query: 642 cataaactgcaatctccagctccaaataatgcacagattacaaaatcatctgtggagccg 701
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5864 caaaaactgcaatctccagctccaaataatgcacagattacaaaatcatctgtggagccg 5805
Query: 702 caaactgttgtaggtaacacaggacataccaaac-acctgcatctgacaacaaacagatt 760
|||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||
Sbjct: 5804 caaactgttgtaggtaacacagaacaaaccaaacaacctgcatctgacaacaaacagatt 5745
Query: 761 tcaaaatctccaaaagaagaattctcg-caacaacgttctgaggactcttcatctcattc 819
||||||||||| ||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct: 5744 tcaaaatctcccaaagaagaa-tctcgtcaacaacgttctgagaactcttcatctcattc 5686
Query: 820 aaaaaccaaatcctcaaagaggaagattgcgagnaatgacgacagtttccctccac-aca 878
|||||| ||||||||||||| || || |||||| || |||||||| ||||||||| |||
Sbjct: 5685 aaaaacaaaatcctcaaagaagaggaatgcgagaaagaacgacagtatccctccacaaca 5626
Query: 879 ggttccagttgcggtttcataacccattgctccatctttcagaacttccaaaagca 934
|||||||||| || |||||| ||| ||||||||||| |||| |||| |||||||
Sbjct: 5625 ggttccagtttcgttttcatcaccatctgctccatcttccagatcttcgaaaagca 5570
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7290
Number of Sequences: 1807
Number of extensions: 7290
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)