BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH05FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1174 0.0
>3x_Contig1590
Length = 13653
Score = 1174 bits (592), Expect = 0.0
Identities = 780/830 (93%), Gaps = 11/830 (1%)
Strand = Plus / Minus
Query: 85 acgctgatgtatatgacttgatggatatgacagaaattatgatctccgaaatggttaagg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5870 acgctgatgtatatgacttgatggatatgacagaaattatgatctccgaaatggttaagg 5811
Query: 145 aaatcactggttcgtacgtcatcaagtatcacccagatccaaatgatgaaactaaggaac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5810 aaatcactggttcgtacgtcatcaagtatcacccagatccaaatgatgaaactaaggaac 5751
Query: 205 tagaattgaacttcactagaccttggaagagaattaatatgattgaagaattagaaaata 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5750 tagaattgaacttcactagaccttggaagagaattaatatgattgaagaattagaaaata 5691
Query: 265 gattccatgtcacattcccagccggtgaccaactgcacactgctgaaactggtgaattct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5690 gattccatgtcacattcccagccggtgaccaactgcacactgctgaaactggtgaattct 5631
Query: 325 tgaagaaggtcttgaaggataacaagatggactgtgctccaccattgaccaatgctagaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5630 tgaagaaggtcttgaaggataacaagatggactgtgctccaccattgaccaatgctagaa 5571
Query: 385 tgttggacaagttggttggagaactagaagacacttgtatcaatccaaccttcatctttg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5570 tgttggacaagttggttggagaactagaagacacttgtatcaatccaaccttcatctttg 5511
Query: 445 gccacccacaaatgatgtctccattggctaaatactccagagatcaaccgggcctatgtg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5510 gccacccacaaatgatgtctccattggctaaatactccagagatcaaccgggcctatgtg 5451
Query: 505 agagatttgaagttttcgttgccacaaaggaaatctgtaacgcttacactgaattgaacg 564
|||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| |
Sbjct: 5450 agagatttgaagttttcgttgccacaaaggaaatctgtaacgcttaaactaaaatgaaag 5391
Query: 565 atccattcgaccaaagagctcgtttcgaagaacaagccaaccaaaaggcccaatgtgatg 624
| ||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct: 5390 acacatacgaccaaagagctcgtttcgaagaacaacccaaccaaaaggcccaaggaaatg 5331
Query: 625 acgaagcacaacttgttgatgaaactttctgcaatgcattggaaatacgg-ttaccacca 683
|||||||| |||||| |||||||| | ||| |||||||||| ||||||| |||||||||
Sbjct: 5330 acgaagcaaaacttgatgatgaaaataactgaaatgcattgg-aatacggtttaccacca 5272
Query: 684 actggtggttgnggtttgtggtattgattgattggccatgttcttggctgattct-acaa 742
||||||||||| || || |||||||| |||||||||||||||||||||||||| |||
Sbjct: 5271 actggtggttgggg-ttaaagtattgatagattggccatgttcttggctgattctaacac 5213
Query: 743 catcagagaagtcttgctattcccaac-ttgaaaccgg-agtcgtcaagaatgaaa--ga 798
||||||||||||||||||||||||||| |||||||||| |||||||||| | |||| |
Sbjct: 5212 catcagagaagtcttgctattcccaactttgaaaccggaagtcgtcaaggaagaaaagaa 5153
Query: 799 ttagc-ataatttatttcgacaagcattttcttttaaccacaactcttttataggattat 857
||||| ||||| |||| |||||||||||||||| || ||||||||||||||| |||||
Sbjct: 5152 ttagcaataatatattcagacaagcattttctttaaaaaacaactcttttatagtattat 5093
Query: 858 attaatagggaattcggatttaataaatgc-aatttttaaattaccttat 906
||||||| ||||| |||||||| ||||| ||||| |||||||| ||||
Sbjct: 5092 attaata-ggaatatcgatttaattaatgcgaatttataaattactttat 5044
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6980
Number of Sequences: 1807
Number of extensions: 6980
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)