BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH05RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig982 1346 0.0
>3x_Contig982
Length = 3343
Score = 1346 bits (679), Expect = 0.0
Identities = 782/806 (97%), Gaps = 8/806 (0%)
Strand = Plus / Minus
Query: 44 gcttgtttagaaagagctgtgaaaggaaagcttattacgtattttttgatatattaaggt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 gcttgtttagaaagagctgtgaaaggaaagcttattacgtattttttgatatattaaggt 990
Query: 104 aaatgttacacagagacaatctattcttttacttatagttagaaatcgcaatcggttata 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 aaatgttacacagagacaatctattcttttacttatagttagaaatcgcaatcggttata 930
Query: 164 taaaagcacagggctaaatggtttagtgttcatttcaattcaacttgtcactgatttttt 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 929 taaaagcacagggctaaatggtttagtgttcatttcaattcaacttgtcactgaacgttt 870
Query: 224 aacatccagaatagagaactgattgttaattgagaaaaccaactcaagaaataaagcggg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 aacatccagaatagagaactgattgttaattgagaaaaccaactcaagaaataaagcggg 810
Query: 284 gttaacaagggaacgacatgtttggttcgagaaagtcacattcttcgttgtctatctcgc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gttaacaagggaacgacatgtttggttcgagaaagtcacattcttcgttgtctatctcgc 750
Query: 344 aacagagattgctttcccactctatgagtgggttatcgcttcaaaatgagcgtaaaatgg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aacagagattgctttcccactctatgagtgggttatcgcttcaaaatgagcgtaaaatgg 690
Query: 404 tttactatgtaggtgttgacgttggtacaggatcagcgcgtgcctgtgtgatcgataatt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tttactatgtaggtgttgacgttggtacaggatcagcgcgtgcctgtgtgatcgataatt 630
Query: 464 tggggaatattctttcgctagctgagaggccaattcaaaggcacgagttgaaaccaaact 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tggggaatattctttcgctagctgagaggccaattcaaaggcacgagttgaaaccaaact 570
Query: 524 atatcactcaatcgtctcaagagatctggaatgcgatctgttactgtgttaagaacgttg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atatcactcaatcgtctcaagagatctggaatgcgatctgttactgtgttaagaacgttg 510
Query: 584 tcagagactctggcgtcgatcctagaactattcatgggattgggttcgacgcgacttgtt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tcagagactctggcgtcgatcctagaactattcatgggattgggttcgacgcgacttgtt 450
Query: 644 cgttagtcgttgttgataatatc-acgatngacgtc-gtgttggtcctgattttacntga 701
||||||||||||||||||||| | |||| |||||| ||||||||||||||||||| |||
Sbjct: 449 cgttagtcgttgttgataataacaacga-ggacgtcggtgttggtcctgattttac-tga 392
Query: 702 cactttac-aaatat-atcttgtggatggatcacagagctattcgagagacccgagagat 759
|| |||| |||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct: 391 caacttacaaaatataatcttgtggatggatcacagagctatcgaagagaccgaggagat 332
Query: 760 t-atgccactggtgataaatgttttgagtacgtaggtgggcaaatgagtgttgaaatgga 818
| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 331 taatgccactggtgataaatgtttgaagtacgtaggtggccaaatgagtgttgaaatgga 272
Query: 819 aattcc-aagatcaaatggttgaaaa 843
|||||| |||||||||||||||||||
Sbjct: 271 aattccaaagatcaaatggttgaaaa 246
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6053
Number of Sequences: 1807
Number of extensions: 6053
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)