BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH06FM1.SCF screened BAC_end
(988 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig413 1114 0.0
>3x_Contig413
Length = 1898
Score = 1114 bits (562), Expect = 0.0
Identities = 681/706 (96%), Gaps = 11/706 (1%)
Strand = Plus / Minus
Query: 84 caaatgtagcaatgaattggagattgcatttgaccgccaagcatttttcgaactgaaaga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1399 caaatgtagcaatgaattggagattgcatttgaccgccaagcatttttcgaactgaaaga 1340
Query: 144 ttgggactcataattgctggatgacaccactgtaatttcttcaccttgagcattgattgt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1339 ttgggactcataattgctggatgacaccactgtaatttcttcaccttgagcattgattgt 1280
Query: 204 ttttagcttcatggctgccgtggcagactgcgacgactcatcagttttctgatttcttgc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1279 ttttagcttcatggctgccgtggcagactgcgacgactcatcagttttctgatttcttgc 1220
Query: 264 agcctccaattctgccatcttctgcctctgaacagatggagctctaatgttctgtcctaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1219 agcctccaattctgccatcttctgcctctgaacagatggagctctaatgttctgtcctaa 1160
Query: 324 aatcaaattcttgatttcagtttgagtcaaagaagcaatgtttacattgtatttttgacc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1159 aatcaaattcttgatttcagtttgagtcaaagaagcaatgtttacattgtatttttgacc 1100
Query: 384 atactctaagagaattagatcacgcatcttcgtctcaatttcaatccactgatcatcagt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 atactctaagagaattagatcacgcatcttcgtctcaatttcaatccactgatcatcagt 1040
Query: 444 aaaagaaggccatagatgattagctctcgttgggattgtaggatcctctaatagaatcat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 aaaagaaggccatagatgattagctctcgttgggattgtaggatcctctaatagaatcat 980
Query: 504 tttggctttttcttcattggttttgagcgctcttaatagc-atatcaatctatag-aagc 561
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct: 979 tttggctttttcttcattggttttgagcgctcttaatagcaatatcaatctagagaaagc 920
Query: 562 agtgtatgcagaaactcgagttagccagtcatcataaatgttgatc-aaaccatttgcgg 620
|||||| ||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct: 919 agtgtaggcagaaactcgagttagccagtcatcataaatgttgaacaaaaccatctgcgg 860
Query: 621 ttctgtagcgcttaaaac-acatcattt-atttttctatgttc-aaacagaagaaaaa-g 676
|||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |
Sbjct: 859 ttctgtagcgcttaaaacaacatcatttaatttttctatgttcaaaacagaagaaaaagg 800
Query: 677 taatctgagctca-tttgaccaatcgaaatgttggggaattctacattgtgtcctt-ctt 734
||||||||||||| || ||| |||||||||||| ||||| |||| ||||| ||| | |
Sbjct: 799 taatctgagctcagttggacgaatcgaaatgtttgggaaatctaacatgtgtacttccat 740
Query: 735 atggtccatcatagcttttctagtaac-ataatttggtttaggttg 779
| ||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 739 agggtccatcatagcttttctagtaactataattt-gtttaggttg 695
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,364
Number of Sequences: 1807
Number of extensions: 13364
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 988
length of database: 10,358,551
effective HSP length: 16
effective length of query: 972
effective length of database: 10,329,639
effective search space: 10040409108
effective search space used: 10040409108
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)