BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH06RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1511 1413 0.0
>3x_Contig1511
Length = 8569
Score = 1413 bits (713), Expect = 0.0
Identities = 809/833 (97%), Gaps = 6/833 (0%)
Strand = Plus / Plus
Query: 48 tcgtaacattgaatcaaagtggcctggataaatttcggtgcgttggcatggacgtattca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7395 tcgtaacattgaatcaaagtggcctggataaatttcggtgcgttggcatggacgtattca 7454
Query: 108 gaggattcacttgcttgctttataatagatagtagatattccttggagtatttgtccgat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7455 gaggattcacttgcttgctttataatagatagtagatattccttggagtatttgtccgat 7514
Query: 168 tcgaatttcatgacagaatcaaacaatgatccagagagcttgtttctgaacaaagcagcg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7515 tcgaatttcatgacagaatcaaacaatgatccagagagcttgtttctgaacaaagcagcg 7574
Query: 228 cctacggacacaccaagtgtactaccagttgatctgaaagcgtaagaaattgacgtggta 287
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 7575 cctacggacacaccaagtgtactaccagttgatctgaaagcgtaggaaattgacgtggta 7634
Query: 288 gcggcttggtgttcatgtggaaccgctgcaatcatggcaagaagtgtaaccgttatcaag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7635 gcggcttggtgttcatgtggaaccgctgcaatcatggcaagaagtgtaaccgttatcaag 7694
Query: 348 acagaagatccaaagtgaggtaatgggagcaagatgtactgtctccatgtgctgatatcg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7695 acagaagatccaaagtgaggtaatgggagcaagatgtactgtctccatgtgctgatatcg 7754
Query: 408 ggcttcattagcaacacttgtagttgcccaaggaccattagaccggtaaatttcaatagg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7755 ggcttcattagcaacacttgtagttgcccaaggaccattagaccggtaaatttcaatagg 7814
Query: 468 aacccgtagtaacggccagtctttttcatgtagtatccagctccgattgaaccgaacgca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7815 aacccgtagtaacggccagtctttttcatgtagtatccagctccgattgaaccgaacgca 7874
Query: 528 gtactgaagatatttggtgctatacgtttacccatatctgtaggcttgagattctgaacg 587
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7875 gtactgaagaaatttggtgctatacgtttacccatatctgtaggcttgagattctgaacg 7934
Query: 588 ctggaccaatatacatgtacatagaacgctagagtgacaccactcatcatacagaaccaa 647
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7935 ctggaccaataaacaggtacatagaacgctagagtgacaccactcatcatacagaaccaa 7994
Query: 648 ttcgcgaaagatgcgccaagtatacttctgttagtcaaaaatctgatcggcaagaatggg 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 7995 ttcgcgaaagatgcgccaagtatacttctgttagtcaaaaatctgatcggcaag-atggg 8053
Query: 708 atcatctgagatgtagagctcaacgtaaatgaaagcagttcctggataaatagttgctac 767
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8054 atcatctgagatgtagagctcaacgtaaatgaaagcagttcctgataaaatagttgctac 8113
Query: 768 tactagttacttggaaatattactggttgtagggattttttttaccacccatgggaactg 827
||||||| ||||| |||||||||| |||||| ||| | | ||||||||||| ||||||||
Sbjct: 8114 tactagtaacttgaaaatattact-gttgtaaggaatctctttaccaccca-gggaactg 8171
Query: 828 ggctacatgaatgccgaat-agaaagtgactattgattaggaaaccgagccag 879
| ||||||||| ||||| |||||||||||| |||| ||| |||||||||||
Sbjct: 8172 gctaacatgaatg-cgaataagaaagtgactaatgataagg-aaccgagccag 8222
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5848
Number of Sequences: 1807
Number of extensions: 5848
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)