BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH07FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1402 912 0.0
>3x_Contig1402
Length = 8511
Score = 912 bits (460), Expect = 0.0
Identities = 495/504 (98%), Gaps = 2/504 (0%)
Strand = Plus / Minus
Query: 88 cccaagcccagaaaccagatattgaaggatttctctgagctgatcatatgcttgccggat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3507 cccaagcccagaaaccagatattgaaggatttctctgagctgatcatatgcttgccggat 3448
Query: 148 gggttttgcatacagtaaatatgaaaaataggtacactttgagtatgctagatagacttt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3447 gggttttgcatacagtaaatatgaaaaataggtacactttgagtatgctagatagacttt 3388
Query: 208 tcaacgttaattgatgtaatactaatacaaattggttcaaaagcactatagaccagcagt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3387 tcaacgttaattgatgtaatactaatacaaattggttcaaaagcactatagaccagcagt 3328
Query: 268 caataacactaggtagaaaacatgctgtgttcgcaataacattgttgagaaattattgct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3327 caataacactaggtagaaaacatgctgtgttcgcaataacattgttgagaaattattgct 3268
Query: 328 ggcaaacattcgttacaaacctatatttttcgaagagtcataggttcagtaatactgttc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3267 ggcaaacattcgttacaaacctatatttttcgaagagtcataggttcagtaatactgttc 3208
Query: 388 agaattttcattatattaaaactactcgtccctcagtcatgagatctcgtattacactat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3207 agaattttcattatattaaaactactcgtccctcagtcatgagatctcgtattacactat 3148
Query: 448 aacgtattacgtatactgccccgattaataagtaaatttcttcattttaaatct-caata 506
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 3147 aacgtattacgtatactgccccgattaataagtaaatttcttcattt-aaatcttcaata 3089
Query: 507 atcactgagtaacagtgttttccatcatcatcggtcgttaattttcaataattacaattt 566
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||| | ||
Sbjct: 3088 atcactgagtaacagtgttttccatcatcatcggtcgttaatttcgaatcaataccactt 3029
Query: 567 tcgttaactaccccaccacaaact 590
|||| |||||||||||||||||||
Sbjct: 3028 tcgtcaactaccccaccacaaact 3005
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7806
Number of Sequences: 1807
Number of extensions: 7806
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)