BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH09FM1.SCF screened BAC_end
(1028 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 997 0.0
>3x_Contig1728
Length = 20685
Score = 997 bits (503), Expect = 0.0
Identities = 555/567 (97%), Gaps = 4/567 (0%)
Strand = Plus / Minus
Query: 93 gcaacgtacgcttctaaccttctgttagatctttgtaaatgcttcactgcattattgatc 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7528 gcaacgtacgcttctaaccttctgttagatctttgtaaatgcttcactgcattattgatc 7469
Query: 153 tcttttctgatctcttgtaattcatgctcagacgattctctaatagcaatcacgaactct 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7468 tcttttctgatctcttgtaattcatgctcagacgattctctaatagcaatcacgaactct 7409
Query: 213 tgaatctgaattggtctacgaataccagaagaatgtgccatatttctatgttaagtctat 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7408 tgaatctgaattggtctacgaataccagaagaatgtgccatatttctatgttaagtctat 7349
Query: 273 ccttagctatgtatgttttttcactttttagtcttgtttcggttggaaagtacgagatga 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7348 ccttagctatgtatgttttttcactttttagtcttgtttcggttggaaagtacgagatga 7289
Query: 333 attaagatcggtatccttaactatatattcaagctagccttttataacaataatttaagc 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7288 attaagatcggtatccttaactatatattcaagctagccttttataacaataatttaagc 7229
Query: 393 cagagtttattctcttactatttatacccaacggtaagatatcacgccccacatatgaca 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7228 cagagtttattctcttactatttatacccaacggtaagatatcacgccccacatatgaca 7169
Query: 453 cccacccctccgaggcaccatcattgcaaatcagagtgtatgatgcgcacgttactatgc 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7168 cccacccctccgaggcaccatcattgcaaatcagagtgtatgatgcgcacgttactatgc 7109
Query: 513 tgactttttccagctccaaagcaacactacttgttaaaaatcacattagctttttctgct 572
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 7108 tgactttttccagctccaaagcaacactacttgttaaaaatcacatcagc-ttttctgct 7050
Query: 573 tttctttcttcctgggctgaatttccccgccttaattccttttttgggatctgaactttg 632
|| ||||| |||||||||| ||||||||||| ||| ||||| | ||||| ||||||||||
Sbjct: 7049 ttcctttc-tcctgggctggatttccccgcc-taagtccttctctgggaactgaactttg 6992
Query: 633 tcccctttcagcaaagagttgggaaac 659
| ||||||||||||||||||| |||||
Sbjct: 6991 t-ccctttcagcaaagagttgagaaac 6966
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,878
Number of Sequences: 1807
Number of extensions: 17878
Number of successful extensions: 344
Number of sequences better than 1.0e-20: 1
length of query: 1028
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1012
effective length of database: 10,329,639
effective search space: 10453594668
effective search space used: 10453594668
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)