BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH10FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1444 997 0.0
>3x_Contig1444
Length = 7580
Score = 997 bits (503), Expect = 0.0
Identities = 625/653 (95%), Gaps = 11/653 (1%)
Strand = Plus / Minus
Query: 87 aacatcgtctatgatctcatctgcgttcactttgtgtaccgactttctgatggggccaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3843 aacatcgtctatgatctcatctgcgttcactttgtgtaccgactttctgatggggccaaa 3784
Query: 147 ctcgctttcaaggtcatccattcgtactaataaattgaattgtggattaatactaactgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3783 ctcgctttcaaggtcatccattcgtactaataaattgaattgtggattaatactaactgt 3724
Query: 207 aatcgaatgagattagtttgacagtgttagaacatggactttggtttatgaattatctaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3723 aatcgaatgagattagtttgacagtgttagaacatggactttggtttatgaattatctaa 3664
Query: 267 ggtaccgttctactactttggatgtattcattgttgttgatttagttttaaggttattaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3663 ggtaccgttctactactttggatgtattcattgttgttgatttagttttaaggttattaa 3604
Query: 327 atgtttagtaaggttacccgaaaataatgaattattactagtcaggtatagtgaattgga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3603 atgtttagtaaggttacccgaaaataatgaattattactagtcaggtatagtgaattgga 3544
Query: 387 tgcaccatagataagaacaacggaacttcttccaatacttgattcaaaacattatcttcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3543 tgcaccatagataagaacaacggaacttcttccaatacttgattcaaaacattatcttcc 3484
Query: 447 gaactggtagcaacaggacataaaagacgtgactcatacgaattaatcccatttaaacaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3483 gaactggtagcaacaggacataaaagacgtgactcatacgaattaatcccatttaaacaa 3424
Query: 507 tgtctaagtaataatcatgtcagaacacacactcttttgttcgcaatgactttatcttgn 566
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3423 tgtctaagtaataatcatgtcagaacacacactc-tttgttcgcaatgactttatcttg- 3366
Query: 567 nctttctttacatctgtgggcccgaaattgattaccattttgacaaaaaagattaaccaa 626
|||||||||||||||| ||| ||||||||| || || | |||||||||||| ||| |||
Sbjct: 3365 tctttctttacatctgt-ggcacgaaattga-taacaatatgacaaaaaagaataaacaa 3308
Query: 627 agattgggaccgaccgaaaaagggaaaaatctttggtatttggtaacttttgacaacttc 686
||| | |||||||| ||||| || |||||||||| || |||||||| | ||||| ||||
Sbjct: 3307 aga-taggaccgacagaaaa--gggaaaatctttgtta-ttggtaac-tctgacaccttc 3253
Query: 687 tcattcaaacttactttttggtctcgtttggcaacctacccccttgtggttaa 739
|||| ||||||||| |||| |||||||||| ||| ||||||||||||| ||||
Sbjct: 3252 tcatccaaacttacatttt-gtctcgtttgtcaa-ctacccccttgtgtttaa 3202
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,717
Number of Sequences: 1807
Number of extensions: 20717
Number of successful extensions: 2926
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)