BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH10RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1497 1253 0.0
>3x_Contig1497
Length = 11582
Score = 1253 bits (632), Expect = 0.0
Identities = 775/810 (95%), Gaps = 10/810 (1%)
Strand = Plus / Plus
Query: 45 cttgagcttcttgttccttcttgtagttttcgtaagcagctaaggcttcttggaattgct 104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 9814 cttgagcttcttgttccttcttgaagttttcgtaagcagctaaggcttcttggaattgct 9873
Query: 105 gttcaaattgttcgtcgttgtccaacaattggatgacttgctgtggtggtagatccaaga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9874 gttcaaattgttcgtcgttgtccaacaattggatgacttgctgtggtggtagatccaaga 9933
Query: 165 tcataccggtgatcttaccagcggcgttttcgtcgtcaatcttggcactgacctttttgt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9934 tcataccggtgatcttaccagcggcgttttcgtcgtcaatcttggcactgaccttcttgt 9993
Query: 225 acaattgttcacccaaggcttgtctttgcttttgttgttggatgtagtgttgttgttggt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9994 acaattgttcacccaaggcttgtctttgcttttgttgttggatgtagtgttgttgttggt 10053
Query: 285 gtcttgggaattggttttgaggtggcataccttggtacattggaccgtttggtctaccag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10054 gtcttgggaattggttttgaggtggcataccttggtacattggaccgtttggtctaccag 10113
Query: 345 caaattgttgtggtggtgggaccataccgttctttggaataccggcacccattgggccgt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10114 caaattgttgtggtggtgggaccataccgttctttggaataccggcacccattgggccgt 10173
Query: 405 tcatacctgggtttggacctgngaaacctcttggggccataacaccatagaacatttgtg 464
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 10174 tcatacctgggtttggacctgggaaacctcttggggccataacaccatagaacatttgtg 10233
Query: 465 gcatgtattggcctggcataccagcagcagcggcagcagcttgttgttgttgctgttgtt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10234 gcatgtattggcctggcataccagcagcagcggcagcagcttgttgttgttgctgttgtt 10293
Query: 525 ggaatctgatttggtttctggcttgaatttgttgagccaattgggatcttctgacattct 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 10294 ggaatctgatttggtttctggcttgaatttgttgagccaattgggatcttctgacatcct 10353
Query: 585 ttctttgagcaatgggcacgtacaatggcttacc-gcaacaatttgtt-gttcttttcng 642
||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 10354 ttctttgagcaatggcaacgtacaatggcttaccggcaacaatttgttggttcttttcgg 10413
Query: 643 tcatagcctttgtagcttctt-tggag-agagaaacaaacgaaaccg-aacccttagagt 699
|||||||||| |||||||||| ||||| ||||||||||||||||||| ||||||||||||
Sbjct: 10414 tcatagccttggtagcttcttctggagaagagaaacaaacgaaaccgaaacccttagagt 10473
Query: 700 taccctcttggtct-ttatgactctagccaaggtgatggtaccgttgggggccaattctt 758
|||||||||||||| | ||||||||||| ||||||||||||||| ||||| ||||| |
Sbjct: 10474 taccctcttggtctctcatgactctagcagaggtgatggtaccgtatggggcgaattc-t 10532
Query: 759 tccttcaatttttcgtcatccatgggaatctcccaatttc-tgtttgacaagttaacccc 817
|||||||||||||||||||| || |||||| |||| ||| || | |||||||||| ||
Sbjct: 10533 tccttcaatttttcgtcatcgat-ggaatcgtccaagttcttgatgaacaagttaacacc 10591
Query: 818 tttggaacttaaccattttttccaaccggt 847
|||||||||| ||| ||||||||| ||||
Sbjct: 10592 -ttggaacttagccaatttttccaaacggt 10620
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8767
Number of Sequences: 1807
Number of extensions: 8767
Number of successful extensions: 375
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)