BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZH11FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1797 1203 0.0
>3x_Contig1797
Length = 34782
Score = 1203 bits (607), Expect = 0.0
Identities = 686/707 (97%), Gaps = 4/707 (0%)
Strand = Plus / Minus
Query: 87 gttttcggtagtcaaattggcagaagcgggcttagaaatcgtagcaggggaagaacttgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33896 gttttcggtagtcaaattggcagaagcgggcttagaaatcgtagcaggggaagaacttgt 33837
Query: 147 cgaagaggcagaacttgtcgaagaggagtcagctctctttaccacgattgacgcctgagc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33836 cgaagaggcagaacttgtcgaagaggagtcagctctctttaccacgattgacgcctgagc 33777
Query: 207 aataagggccaagtaaagagttagtagaatgtttgaagaggttatggagttcatcatctt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33776 aataagggccaagtaaagagttagtagaatgtttgaagaggttatggagttcatcatctt 33717
Query: 267 tatttcaagcagccgatgtttgcatccaaagtaatggtttcctttgtactgaatactatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33716 tatttcaagcagccgatgtttgcatccaaagtaatggtttcctttgtactgaatactatg 33657
Query: 327 gtgtcaattacacaataattcttgcaaaacgaacacacttatctatggaacattgaaact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33656 gtgtcaattacacaataattcttgcaaaacgaacacacttatctatggaacattgaaact 33597
Query: 387 ttcttgtcccttttatatgttaagtactatagttttatgtatgggatcatacatgtgtcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33596 ttcttgtcccttttatatgttaagtactatagttttatgtatgggatcatacatgtgtcc 33537
Query: 447 tcggaccaagattcccaatgaacctacactcagtacttcaaaattcaactaacaataaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33536 tcggaccaagattcccaatgaacctacactcagtacttcaaaattcaactaacaataaga 33477
Query: 507 tgcccggtgaactgacgtccaacataccttttacgtacaatcgagtaccaaagtaccttt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 33476 tgcccggtgaactgacgtccaacataccttttacgtacaatcgagtaccaaagtacc-tt 33418
Query: 567 tgcagtaattaaactttctcataataaaaacttcatcgattactataaacaaattgggac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33417 tgcagtaattaaactttctcataataaaaacttcatcgattactataaacaaattgggac 33358
Query: 627 ctgacctgtcccttttgtctgctcagcgtgttctgaaagtacaaaacag-aagggattct 685
||||||||||||||||||||||||||||||||||||||||| |||||| |||| | |||
Sbjct: 33357 ctgacctgtcccttttgtctgctcagcgtgttctgaaagtaacaaacagaaaggaaatct 33298
Query: 686 ccacttcctgcgttttttttgtgttggcgttcgagaaaaagtggtttttttgtttttgaa 745
|||||||||||||| ||| ||||||| |||||||||||| ||| ||| | || | |||||
Sbjct: 33297 ccacttcctgcgttctttctgtgttgccgttcgagaaaaggtgttttatatg-tattgaa 33239
Query: 746 ccagttcaaatttagaaaaaacacactttagataaaacaacaaggtg 792
||||| ||| || || |||||||||||| ||||||||||||| ||||
Sbjct: 33238 ccagtacaacttaag-aaaaacacacttaagataaaacaacagggtg 33193
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6949
Number of Sequences: 1807
Number of extensions: 6949
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)